Literature DB >> 29400063

Energy Renormalization for Coarse-Graining the Dynamics of a Model Glass-Forming Liquid.

Wenjie Xia1, Jake Song, Nitin K Hansoge, Frederick R Phelan1, Sinan Keten, Jack F Douglas1.   

Abstract

Coarse-grained modeling achieves the enhanced computational efficiency required to model glass-forming materials by integrating out "unessential" molecular degrees of freedom, but no effective temperature transferable coarse-graining method currently exists to capture dynamics. We address this fundamental problem through an energy-renormalization scheme, in conjunction with the localization model of relaxation relating the Debye-Waller factor ⟨u2⟩ to the structural relaxation time τ. Taking ortho-terphenyl as a model small-molecule glass-forming liquid, we show that preserving ⟨u2⟩ (at picosecond time scale) under coarse-graining by renormalizing the cohesive interaction strength allows for quantitative prediction of both short- and long-time dynamics covering the entire temperature range of glass formation. Our findings provide physical insights into the dynamics of cooled liquids and make progress for building temperature-transferable coarse-grained models that predict key properties of glass-forming materials.

Entities:  

Year:  2018        PMID: 29400063      PMCID: PMC6217959          DOI: 10.1021/acs.jpcb.8b00321

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  29 in total

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Authors:  P G Debenedetti; F H Stillinger
Journal:  Nature       Date:  2001-03-08       Impact factor: 49.962

2.  How good are coarse-grained polymer models? A comparison for atactic polystyrene.

Authors:  Hossein Ali Karimi-Varzaneh; Nico F A van der Vegt; Florian Müller-Plathe; Paola Carbone
Journal:  Chemphyschem       Date:  2012-06-19       Impact factor: 3.102

3.  Anomalous waterlike behavior in spherically-symmetric water models optimized with the relative entropy.

Authors:  Aviel Chaimovich; M Scott Shell
Journal:  Phys Chem Chem Phys       Date:  2009-01-27       Impact factor: 3.676

4.  Obtaining fully dynamic coarse-grained models from MD.

Authors:  Pep Español; Ignacio Zúñiga
Journal:  Phys Chem Chem Phys       Date:  2011-03-25       Impact factor: 3.676

5.  Multiscale modeling of soft matter: scaling of dynamics.

Authors:  Dominik Fritz; Konstantin Koschke; Vagelis A Harmandaris; Nico F A van der Vegt; Kurt Kremer
Journal:  Phys Chem Chem Phys       Date:  2011-04-05       Impact factor: 3.676

6.  Quantitative relations between cooperative motion, emergent elasticity, and free volume in model glass-forming polymer materials.

Authors:  Beatriz A Pazmiño Betancourt; Paul Z Hanakata; Francis W Starr; Jack F Douglas
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-23       Impact factor: 11.205

Review 7.  Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: a ubiquitous property of water.

Authors:  R Lumry; S Rajender
Journal:  Biopolymers       Date:  1970       Impact factor: 2.505

8.  A multiscale coarse-graining method for biomolecular systems.

Authors:  Sergei Izvekov; Gregory A Voth
Journal:  J Phys Chem B       Date:  2005-02-24       Impact factor: 2.991

9.  Generalized localization model of relaxation in glass-forming liquids.

Authors:  David S Simmons; Marcus T Cicerone; Qin Zhong; Madhusudan Tyagi; Jack F Douglas
Journal:  Soft Matter       Date:  2012-12-07       Impact factor: 3.679

10.  Systematic Method for Thermomechanically Consistent Coarse-Graining: A Universal Model for Methacrylate-Based Polymers.

Authors:  David D Hsu; Wenjie Xia; Steven G Arturo; Sinan Keten
Journal:  J Chem Theory Comput       Date:  2014-05-13       Impact factor: 6.006

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  1 in total

Review 1.  Bottom-up Coarse-Graining: Principles and Perspectives.

Authors:  Jaehyeok Jin; Alexander J Pak; Aleksander E P Durumeric; Timothy D Loose; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-07       Impact factor: 6.578

  1 in total

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