Literature DB >> 29397727

Cation-π Interactions between Quaternary Ammonium Ions and Amino Acid Aromatic Groups in Aqueous Solution.

Esam A Orabi1, Guillaume Lamoureux1.   

Abstract

Cation-π interactions play important roles in the stabilization of protein structures and protein-ligand complexes. They contribute to the binding of quaternary ammonium ligands (mainly RNH3+ and RN(CH3)3+) to various protein receptors and are likely involved in the blockage of potassium channels by tetramethylammonium (TMA+) and tetraethylammonium (TEA+). Polarizable molecular models are calibrated for NH4+, TMA+, and TEA+ interacting with benzene, toluene, 4-methylphenol, and 3-methylindole (representing aromatic amino acid side chains) based on the ab initio MP2(full)/6-311++G(d,p) properties of the complexes. Whereas the gas-phase affinity of the ions with a given aromatic follows the trend NH4+ > TMA+ > TEA+, molecular dynamics simulations using the polarizable models show a reverse trend in water, likely due to a contribution from the hydrophobic effect. This reversed trend follows the solubility of aromatic hydrocarbons in quaternary ammonium salt solutions, which suggests a role for cation-π interactions in the salting-in of aromatic compounds in solution. Simulations in water show that the complexes possess binding free energies ranging from -1.3 to -3.3 kcal/mol (compared to gas-phase binding energies between -8.5 and -25.0 kcal/mol). Interestingly, whereas the most stable complexes involve TEA+ (the largest ion), the most stable solvent-separated complexes involve TMA+ (the intermediate-size ion).

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Year:  2018        PMID: 29397727     DOI: 10.1021/acs.jpcb.7b11983

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Improved Modeling of Cation-π and Anion-Ring Interactions Using the Drude Polarizable Empirical Force Field for Proteins.

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  J Comput Chem       Date:  2019-09-13       Impact factor: 3.376

2.  Explicit Representation of Cation-π Interactions in Force Fields with 1/r4 Nonbonded Terms.

Authors:  Aysegul Turupcu; Julian Tirado-Rives; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2020-10-13       Impact factor: 6.006

Review 3.  Cation-π Interactions and their Functional Roles in Membrane Proteins.

Authors:  Daniel T Infield; Ali Rasouli; Grace D Galles; Christophe Chipot; Emad Tajkhorshid; Christopher A Ahern
Journal:  J Mol Biol       Date:  2021-05-04       Impact factor: 5.469

4.  Changes in the Secondary Structure and Assembly of Proteins on Fluoride Ceramic (CeF3) Nanoparticle Surfaces.

Authors:  Naoya Sakaguchi; Samal Kaumbekova; Ryodai Itano; Mehdi Amouei Torkmahalleh; Dhawal Shah; Masakazu Umezawa
Journal:  ACS Appl Bio Mater       Date:  2022-06-02

5.  Comparative Analysis of Sulfonium-π, Ammonium-π, and Sulfur-π Interactions and Relevance to SAM-Dependent Methyltransferases.

Authors:  Katherine I Albanese; Andrew Leaver-Fay; Joseph W Treacy; Rodney Park; K N Houk; Brian Kuhlman; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2022-02-02       Impact factor: 15.419

6.  Spectroscopic and Theoretical Studies of Hg(II) Complexation with Some Dicysteinyl Tetrapeptides.

Authors:  Elliot Springfield; Alana Willis; John Merle; Johanna Mazlo; Maria Ngu-Schwemlein
Journal:  Bioinorg Chem Appl       Date:  2021-07-23       Impact factor: 7.778

  6 in total

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