Literature DB >> 29391852

The systematic position of Dryopteris blanfordii subsp. nigrosquamosa (Ching) Fraser-Jenkins within the genus Dryopteris Adans.

Anastasiya A Krinitsina1, Maxim S Belenikin2, Olga A Churikova1, Sergey V Kuptsov1, Maxim I Antipin3, Maria D Logacheva4, Anna S Speranskaya1.   

Abstract

Dryopteris blanfordii (C.Hope) C.Chr. is a member of the Dryopteridaceae, growing in high altitude Picea or Abies forests (2900-3500 m) in China and India. Phylogenetic relationships between D. blanfordii subsp. nigrosquamosa and closely related species of Dryopteris were investigated using a combined analysis of multiple molecular data sets (the protein-coding region of rbcL and matK genes and intergenic spacers psbA-trnH, trnP-petG, rps4-trnS, trnL-trnF and rbcL-accD). An assumption about the position of D. blanfordii subsp. nigrosquamosa within Dryopteris was made by using the Maximum Likelihood and Bayesian Inference approach and chloroplast marker sequences of Dryopteris species from GenBank. The results demonstrated that Asian taxa D. blanfordii subsp. nigrosquamosa and D. laeta as well as two American species D. arguta and D. marginalis belong to the same clade, all four of them being part of Dryopteris section Dryopteris.

Entities:  

Keywords:  Dryopteridaceae; Dryopteris blanfordii subsp. nigrosquamosa; chloroplast genome markers; phylogeny

Year:  2017        PMID: 29391852      PMCID: PMC5784233          DOI: 10.3897/phytokeys.90.14745

Source DB:  PubMed          Journal:  PhytoKeys        ISSN: 1314-2003            Impact factor:   1.635


  14 in total

1.  Phylogeny, divergence times, and historical biogeography of New World Dryopteris (Dryopteridaceae).

Authors:  Emily B Sessa; Elizabeth A Zimmer; Thomas J Givnish
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2.  Reticulate evolution on a global scale: a nuclear phylogeny for New World Dryopteris (Dryopteridaceae).

Authors:  Emily B Sessa; Elizabeth A Zimmer; Thomas J Givnish
Journal:  Mol Phylogenet Evol       Date:  2012-05-24       Impact factor: 4.286

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  Unraveling reticulate evolution in North American Dryopteris (Dryopteridaceae).

Authors:  Emily B Sessa; Elizabeth A Zimmer; Thomas J Givnish
Journal:  BMC Evol Biol       Date:  2012-06-30       Impact factor: 3.260

7.  Molecular circumscription and major evolutionary lineages of the fern genus Dryopteris (Dryopteridaceae).

Authors:  Li-Bing Zhang; Liang Zhang; Shi-Yong Dong; Emily B Sessa; Xin-Fen Gao; Atsushi Ebihara
Journal:  BMC Evol Biol       Date:  2012-09-13       Impact factor: 3.260

8.  An improved protocol for intact chloroplasts and cpDNA isolation in conifers.

Authors:  Leila do Nascimento Vieira; Helisson Faoro; Hugo Pacheco de Freitas Fraga; Marcelo Rogalski; Emanuel Maltempi de Souza; Fábio de Oliveira Pedrosa; Rubens Onofre Nodari; Miguel Pedro Guerra
Journal:  PLoS One       Date:  2014-01-02       Impact factor: 3.240

9.  BEAST 2: a software platform for Bayesian evolutionary analysis.

Authors:  Remco Bouckaert; Joseph Heled; Denise Kühnert; Tim Vaughan; Chieh-Hsi Wu; Dong Xie; Marc A Suchard; Andrew Rambaut; Alexei J Drummond
Journal:  PLoS Comput Biol       Date:  2014-04-10       Impact factor: 4.475

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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