Literature DB >> 29390004

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Nicola Mulder1, Russell Schwartz2, Michelle D Brazas3, Cath Brooksbank4, Bruno Gaeta5, Sarah L Morgan4, Mark A Pauley6, Anne Rosenwald7, Gabriella Rustici8, Michael Sierk9, Tandy Warnow10, Lonnie Welch11.   

Abstract

Bioinformatics is recognized as part of the essential knowledge base of numerous career paths in biomedical research and healthcare. However, there is little agreement in the field over what that knowledge entails or how best to provide it. These disagreements are compounded by the wide range of populations in need of bioinformatics training, with divergent prior backgrounds and intended application areas. The Curriculum Task Force of the International Society of Computational Biology (ISCB) Education Committee has sought to provide a framework for training needs and curricula in terms of a set of bioinformatics core competencies that cut across many user personas and training programs. The initial competencies developed based on surveys of employers and training programs have since been refined through a multiyear process of community engagement. This report describes the current status of the competencies and presents a series of use cases illustrating how they are being applied in diverse training contexts. These use cases are intended to demonstrate how others can make use of the competencies and engage in the process of their continuing refinement and application. The report concludes with a consideration of remaining challenges and future plans.

Entities:  

Mesh:

Year:  2018        PMID: 29390004      PMCID: PMC5794068          DOI: 10.1371/journal.pcbi.1005772

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  5 in total

1.  A report of the Curriculum Task Force of the ISCB Education Committee.

Authors:  Lonnie R Welch; Russell Schwartz; Fran Lewitter
Journal:  PLoS Comput Biol       Date:  2012-06-28       Impact factor: 4.475

2.  Bioinformatics curriculum guidelines: toward a definition of core competencies.

Authors:  Lonnie Welch; Fran Lewitter; Russell Schwartz; Cath Brooksbank; Predrag Radivojac; Bruno Gaeta; Maria Victoria Schneider
Journal:  PLoS Comput Biol       Date:  2014-03-06       Impact factor: 4.475

3.  The CourseSource Bioinformatics Learning Framework.

Authors:  Anne G Rosenwald; Mark A Pauley; Lonnie Welch; Sarah C R Elgin; Robin Wright; Jessamina Blum
Journal:  CBE Life Sci Educ       Date:  2016       Impact factor: 3.325

4.  Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

Authors:  Lonnie Welch; Cath Brooksbank; Russell Schwartz; Sarah L Morgan; Bruno Gaeta; Alastair M Kilpatrick; Daniel Mietchen; Benjamin L Moore; Nicola Mulder; Mark Pauley; William Pearson; Predrag Radivojac; Naomi Rosenberg; Anne Rosenwald; Gabriella Rustici; Tandy Warnow
Journal:  PLoS Comput Biol       Date:  2016-05-13       Impact factor: 4.475

5.  H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa.

Authors:  Nicola J Mulder; Ezekiel Adebiyi; Raouf Alami; Alia Benkahla; James Brandful; Seydou Doumbia; Dean Everett; Faisal M Fadlelmola; Fatima Gaboun; Simani Gaseitsiwe; Hassan Ghazal; Scott Hazelhurst; Winston Hide; Azeddine Ibrahimi; Yasmina Jaufeerally Fakim; C Victor Jongeneel; Fourie Joubert; Samar Kassim; Jonathan Kayondo; Judit Kumuthini; Sylvester Lyantagaye; Julie Makani; Ahmed Mansour Alzohairy; Daniel Masiga; Ahmed Moussa; Oyekanmi Nash; Odile Ouwe Missi Oukem-Boyer; Ellis Owusu-Dabo; Sumir Panji; Hugh Patterton; Fouzia Radouani; Khalid Sadki; Fouad Seghrouchni; Özlem Tastan Bishop; Nicki Tiffin; Nzovu Ulenga
Journal:  Genome Res       Date:  2015-12-01       Impact factor: 9.438

  5 in total
  27 in total

1.  Graphery: interactive tutorials for biological network algorithms.

Authors:  Heyuan Zeng; Jinbiao Zhang; Gabriel A Preising; Tobias Rubel; Pramesh Singh; Anna Ritz
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

2.  Delivering blended bioinformatics training in resource-limited settings: a case study on the University of Khartoum H3ABioNet node.

Authors:  Azza E Ahmed; Ayah A Awadallah; Mawada Tagelsir; Maram A Suliman; Atheer Eltigani; Hassan Elsafi; Basil D Hamdelnile; Mohamed A Mukhtar; Faisal M Fadlelmola
Journal:  Brief Bioinform       Date:  2020-03-23       Impact factor: 11.622

3.  Post-COVID-19 Action: Guarding Africa's Crops against Viral Epidemics Requires Research Capacity Building That Unifies a Trio of Transdisciplinary Interventions.

Authors:  Francis O Wamonje
Journal:  Viruses       Date:  2020-11-09       Impact factor: 5.048

4.  An approachable, flexible and practical machine learning workshop for biologists.

Authors:  Chris S Magnano; Fangzhou Mu; Rosemary S Russ; Milica Cvetkovic; Debora Treu; Anthony Gitter
Journal:  Bioinformatics       Date:  2022-06-24       Impact factor: 6.931

5.  Activating transcription factor 3 is a potential target and a new biomarker for the prognosis of atherosclerosis.

Authors:  Weiwei Qin; Huiyu Yang; Gaizhen Liu; Rui Bai; Yunfei Bian; Zhiming Yang; Chuanshi Xiao
Journal:  Hum Cell       Date:  2020-09-21       Impact factor: 4.174

6.  Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles.

Authors:  Alastair M Kilpatrick; Audra Anjum; Lonnie Welch
Journal:  PLoS Comput Biol       Date:  2020-05-14       Impact factor: 4.475

7.  Integrating Molecular Biology and Bioinformatics Education.

Authors:  Boas Pucker; Hanna Marie Schilbert; Sina Franziska Schumacher
Journal:  J Integr Bioinform       Date:  2019-05-30

8.  Bioinformatics in Jordan: Status, challenges, and future directions.

Authors:  Qanita Bani Baker; Maryam S Nuser
Journal:  PLoS Comput Biol       Date:  2019-09-12       Impact factor: 4.475

9.  Editorial: Curriculum Applications in Microbiology: Bioinformatics in the Classroom.

Authors:  Melanie Crystal Melendrez; Sophie Shaw; C Titus Brown; Brad W Goodner; Christopher Kvaal
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

10.  Blending Gagne's Instructional Model with Peyton's Approach to Design an Introductory Bioinformatics Lesson Plan for Medical Students: Proof-of-Concept Study.

Authors:  Richa Tambi; Riad Bayoumi; Peter Lansberg; Yajnavalka Banerjee
Journal:  JMIR Med Educ       Date:  2018-10-25
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