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Literature DB >> 29388968

Data visualization tools drive interactivity and reproducibility in online publishing.

Jeffrey M Perkel.

Abstract

Mesh：

Year: 2018 PMID： 29388968 DOI： 10.1038/d41586-018-01322-9

Source DB: PubMed Journal: Nature ISSN： 0028-0836 Impact factor: 49.962

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12 in total

1. Open collaborative writing with Manubot.

Authors: Daniel S Himmelstein; Vincent Rubinetti; David R Slochower; Dongbo Hu; Venkat S Malladi; Casey S Greene; Anthony Gitter
Journal: PLoS Comput Biol Date: 2019-06-24 Impact factor: 4.475

2. Interpretation of differential gene expression results of RNA-seq data: review and integration.

Authors: Adam McDermaid; Brandon Monier; Jing Zhao; Bingqiang Liu; Qin Ma
Journal: Brief Bioinform Date: 2019-11-27 Impact factor: 11.622

3. AncestryView: data-driven visualization of whole-genome local-ancestry.

Authors: Yan Zhao; Li Ma; Sukun Jiang; George D Song; Shaohua He; Hong Li; Qing Song
Journal: Bioinformatics Date: 2019-03-01 Impact factor: 6.937

4. BioVisReport: A Markdown-based lightweight website builder for reproducible and interactive visualization of results from peer-reviewed publications.

Authors: Jingcheng Yang; Yaqing Liu; Jun Shang; Yechao Huang; Ying Yu; Zhihui Li; Leming Shi; Zihan Ran
Journal: Comput Struct Biotechnol J Date: 2022-06-08 Impact factor: 6.155

5. Xenon LFP Analysis Platform Is a Novel Graphical User Interface for Analysis of Local Field Potential From Large-Scale MEA Recordings.

Authors: Arjun Mahadevan; Neela K Codadu; R Ryley Parrish
Journal: Front Neurosci Date: 2022-07-01 Impact factor: 5.152

6. A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation.

Authors: Adam McDermaid; Xin Chen; Yiran Zhang; Cankun Wang; Shaopeng Gu; Juan Xie; Qin Ma
Journal: Front Genet Date: 2018-08-14 Impact factor: 4.599

Data visualization tools drive interactivity and reproducibility in online publishing.

1. Open collaborative writing with Manubot.

2. Interpretation of differential gene expression results of RNA-seq data: review and integration.

3. AncestryView: data-driven visualization of whole-genome local-ancestry.

4. BioVisReport: A Markdown-based lightweight website builder for reproducible and interactive visualization of results from peer-reviewed publications.

5. Xenon LFP Analysis Platform Is a Novel Graphical User Interface for Analysis of Local Field Potential From Large-Scale MEA Recordings.

6. A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation.

7. IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.

8. ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data.

9. Interactive guidelines: Public communication of data-based research in cities.

10. Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey.