Literature DB >> 29388132

Overview of Protocols for Studying Extracellular RNA and Extracellular Vesicles.

Julia Small1, Sabrina Roy2,3, Roger Alexander4, Leonora Balaj5.   

Abstract

Understanding the role of extracellular RNA (exRNA) has emerged as an exciting avenue for biomarker, therapeutic, as well as basic cell-cell communication applications and discoveries. Multiple protocols, kits, and procedures have been developed in the last decade to allow fractionation as well as isolation of subpopulations of macromolecules of interest found in biofluids. Here, we introduce the protocols decision tree developed by the Extracellular RNA Communication Consortium and available on their website (exRNA portal), and compare all methods currently available to the exRNA field and report pros and cons for each platform.

Entities:  

Keywords:  Biomarkers; Exosomes; Extracellular RNA; Kits; Protocols; Ribonuclear particles

Mesh:

Substances:

Year:  2018        PMID: 29388132      PMCID: PMC6472704          DOI: 10.1007/978-1-4939-7652-2_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

Review 1.  Exosomes: current knowledge of their composition, biological functions, and diagnostic and therapeutic potentials.

Authors:  Alexander V Vlassov; Susan Magdaleno; Robert Setterquist; Rick Conrad
Journal:  Biochim Biophys Acta       Date:  2012-04-01

2.  Isolation and characterization of exosomes from cell culture supernatants and biological fluids.

Authors:  Clotilde Théry; Sebastian Amigorena; Graça Raposo; Aled Clayton
Journal:  Curr Protoc Cell Biol       Date:  2006-04

3.  Protein typing of circulating microvesicles allows real-time monitoring of glioblastoma therapy.

Authors:  Huilin Shao; Jaehoon Chung; Leonora Balaj; Alain Charest; Darell D Bigner; Bob S Carter; Fred H Hochberg; Xandra O Breakefield; Ralph Weissleder; Hakho Lee
Journal:  Nat Med       Date:  2012-11-11       Impact factor: 53.440

4.  Exosome isolation for proteomic analyses and RNA profiling.

Authors:  Douglas D Taylor; Wolfgang Zacharias; Cicek Gercel-Taylor
Journal:  Methods Mol Biol       Date:  2011

5.  Microfluidic isolation and transcriptome analysis of serum microvesicles.

Authors:  Chihchen Chen; Johan Skog; Chia-Hsien Hsu; Ryan T Lessard; Leonora Balaj; Thomas Wurdinger; Bob S Carter; Xandra O Breakefield; Mehmet Toner; Daniel Irimia
Journal:  Lab Chip       Date:  2009-12-08       Impact factor: 6.799

6.  Isolation and characterization of RNA-containing exosomes.

Authors:  Cecilia Lässer; Maria Eldh; Jan Lötvall
Journal:  J Vis Exp       Date:  2012-01-09       Impact factor: 1.355

7.  Changes in circulating microRNA levels associated with prostate cancer.

Authors:  R J Bryant; T Pawlowski; J W F Catto; G Marsden; R L Vessella; B Rhees; C Kuslich; T Visakorpi; F C Hamdy
Journal:  Br J Cancer       Date:  2012-01-12       Impact factor: 7.640

8.  Heparin affinity purification of extracellular vesicles.

Authors:  Leonora Balaj; Nadia A Atai; Weilin Chen; Dakai Mu; Bakhos A Tannous; Xandra O Breakefield; Johan Skog; Casey A Maguire
Journal:  Sci Rep       Date:  2015-05-19       Impact factor: 4.379

9.  Rapid isolation of extracellular vesicles from cell culture and biological fluids using a synthetic peptide with specific affinity for heat shock proteins.

Authors:  Anirban Ghosh; Michelle Davey; Ian C Chute; Steven G Griffiths; Scott Lewis; Simi Chacko; David Barnett; Nicolas Crapoulet; Sébastien Fournier; Andrew Joy; Michelle C Caissie; Amanda D Ferguson; Melissa Daigle; M Vicki Meli; Stephen M Lewis; Rodney J Ouellette
Journal:  PLoS One       Date:  2014-10-17       Impact factor: 3.240

10.  Single-step isolation of extracellular vesicles by size-exclusion chromatography.

Authors:  Anita N Böing; Edwin van der Pol; Anita E Grootemaat; Frank A W Coumans; Auguste Sturk; Rienk Nieuwland
Journal:  J Extracell Vesicles       Date:  2014-09-08
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  4 in total

Review 1.  Examining the evidence for extracellular RNA function in mammals.

Authors:  Hannah N Gruner; Michael T McManus
Journal:  Nat Rev Genet       Date:  2021-04-06       Impact factor: 53.242

2.  Size-Exclusion Chromatography Separation Reveals That Vesicular and Non-Vesicular Small RNA Profiles Differ in Cell Free Urine.

Authors:  Jenni Karttunen; Sarah E Stewart; Lajos Kalmar; Andrew J Grant; Fiona E Karet Frankl; Tim L Williams
Journal:  Int J Mol Sci       Date:  2021-05-05       Impact factor: 5.923

Review 3.  Navigating the Landscape of Tumor Extracellular Vesicle Heterogeneity.

Authors:  Sabrina Roy; Hsing-Ying Lin; Chung-Yu Chou; Chen-Han Huang; Julia Small; Noah Sadik; Caroline M Ayinon; Elizabeth Lansbury; Lilian Cruz; Anudeep Yekula; Pamela S Jones; Leonora Balaj; Bob S Carter
Journal:  Int J Mol Sci       Date:  2019-03-18       Impact factor: 5.923

4.  Associations between maternal lifetime stressors and negative events in pregnancy and breast milk-derived extracellular vesicle microRNAs in the programming of intergenerational stress mechanisms (PRISM) pregnancy cohort.

Authors:  Anne K Bozack; Elena Colicino; Rodosthenis Rodosthenous; Tessa R Bloomquist; Andrea A Baccarelli; Robert O Wright; Rosalind J Wright; Alison G Lee
Journal:  Epigenetics       Date:  2020-08-25       Impact factor: 4.528

  4 in total

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