| Literature DB >> 29386425 |
Tomohiro Morohoshi1, Kento Ogata1, Tetsuo Okura2, Shunsuke Sato2.
Abstract
MicroEntities:
Keywords: biodegradable plastic; biofilm; degradation; microbial community; poly(3-hydroxybutyrate-co-3-hydroxyhexanoate)
Mesh:
Substances:
Year: 2018 PMID: 29386425 PMCID: PMC5877338 DOI: 10.1264/jsme2.ME17052
Source DB: PubMed Journal: Microbes Environ ISSN: 1342-6311 Impact factor: 2.912
Description of plastics used in the present study.
| Polymer | Manufacturer | Product name | MW |
|---|---|---|---|
| PLA | NatureWorks (USA) | Ingeo™ 10361D | 160,000 |
| PBAT | BASF (Germany) | EcoFlex® C1200 | 120,000 |
| PBS | Showa Highpolymer (Japan) | Bionolle™ 1020MD | 150,000 |
| PBSA | Showa Highpolymer (Japan) | Bionolle™ 3001MD | 220,000 |
| PCL | Perstorp (UK) | Capa™ 6500 | 150,000 |
| PHBH (3HHx=6 mol%) | Kaneka (Japan) | KANEKA Biodegradable Polymer™ X131A | 610,000 |
| PHBH (3HHx=11 mol%) | Kaneka (Japan) | KANEKA Biodegradable Polymer™ X151A | 550,000 |
The weight average for molecular weight.
Fig. 1Biofilm formation on PHBH X131A and X151A film surfaces in seawater samples obtained at Takasago harbor on March 15 (1st exam) and April 19 (2nd exam), 2016.
Biofilm formation on plastic film surfaces in seawater samples.
| Sampling date | Mar 15 | Apr 19 | June 8 |
|---|---|---|---|
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| Temp. (°C) | 11 | 14 | 20 |
| PLA | — | N.T. | N.T. |
| PBAT | — | — | N.T. |
| PBS | — | — | N.T. |
| PBSA | — | N.T. | N.T. |
| PCL | B | D | D |
| PHBH (X131A) | B, B | B, B, D | D, D, D |
| PHBH (X151A) | B, B | B, B, B | D, D, D |
—, nothing to change.
N.T., not tested.
B, forming biofilms.
D, mostly or partially degraded.
Characteristics of clone libraries from biofilms on PHBH films.
| PHBH X131A | PHBH X151A | |||||||||||||||
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| Sampling date | Mar 15 | Apr 19 | June 8 | Mar 15 | Apr 19 | June 8 | ||||||||||
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| Number of samples | 1 | 2 | 1 | 2 | 3 | 1 | 2 | 3 | 1 | 2 | 1 | 2 | 3 | 1 | 2 | 3 |
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| Condition of films | B | B | B | B | D | D | D | D | B | B | B | B | B | D | D | D |
| Number of sequences | 90 | 94 | 94 | 94 | 94 | 96 | 96 | 95 | 92 | 89 | 92 | 96 | 94 | 93 | 94 | 95 |
| Number of OTUs | 17 | 22 | 39 | 36 | 17 | 4 | 12 | 28 | 22 | 30 | 33 | 35 | 31 | 18 | 11 | 15 |
| Number of singletons | 11 | 11 | 26 | 24 | 10 | 3 | 8 | 17 | 14 | 23 | 23 | 26 | 21 | 12 | 7 | 7 |
| Library coverage (%) | 87.8 | 88.3 | 72.3 | 74.5 | 89.4 | 95.8 | 91.7 | 82.1 | 84.8 | 74.2 | 75.0 | 72.9 | 77.7 | 87.1 | 92.6 | 92.6 |
B, forming biofilms.
D, mostly or partially degraded.
Library coverage (Cx)=1–(nx/N), where nx is the number of singletons that are encountered only once in a library and N is the total number of clones.
Classification of OTUs from biofilms on PHBH film surfaces.
| OTUs | Closest species | Family | Accession No. | Identity (%) |
|---|---|---|---|---|
| OTU01 | AB550558 | 96.4 | ||
| OTU02 | AJ631302 | 96.3 | ||
| OTU03 | Y17387 | 97.6 | ||
| OTU04 | AY177712 | 96.8 | ||
| OTU05 | DQ514304 | 99.4 | ||
| OTU06 | AY177712 | 97.3 | ||
| OTU07 | AB302370 | 97.6 | ||
| OTU08 | AB255401 | 99.7 | ||
| OTU09 | FJ847942 | 96.3 | ||
| OTU10 | KJ658262 | 89.9 | ||
| OTU11 | AB071665 | 99.5 | ||
| OTU12 | EF612768 | 97.6 | ||
| OTU13 | JF748732 | 96.8 | ||
| OTU14 | JF748732 | 96.6 | ||
| OTU15 | AJ431699 | 94.7 | ||
| OTU16 | AB011364 | 97.4 | ||
| OTU17 | EU183316 | 100 | ||
| OTU18 | EU183316 | 98.1 | ||
| OTU19 | AY207503 | 94.1 | ||
| OTU20 | AJ488501 | 97.6 | ||
| OTU21 | EU365479 | 97.6 | ||
| OTU22 | AB247623 | 99.5 | ||
| OTU23 | AF039292 | 99.4 |
Fig. 2Phylogenetic distribution of OTUs based on 16S rRNA gene sequences of clone libraries. The dendrogram indicates phylogenetic relationships among the representative sequences of OTUs (defined by ≥97% identity). The table indicates the clone numbers belonging to each OTU in each library. The conditions of PHBH films were shown as B (forming biofilms) or D (mostly or partially degraded).
Fig. 3PHBH-degrading activity (A) and biofilm formation (B) of PHBH-degrading strains (E11, S23, and S35) and a negative control strain (S26). PHBH-degrading activity was detected on MB-PHBH agar plates after an incubation at 30°C for 3 d. The development of clear zones around the colonies was evaluated as the degradation of PHBH. Biofilm formation on the surface of PHBH X131A films was evaluated in filter-sterilized seawater after an incubation at 23°C for 3 d.
Fig. 4Phylogenetic tree of 16S rRNA gene sequences from PHBH-degrading isolates. The bacterial isolates in the present study were shown in bold style. The phylogenetic tree was constructed by the neighbor-joining method with the ClustalW program of MEGA. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1,000 replicates) are shown next to the branches. The scale bar represents 0.02 substitutions per nucleotide position.