Literature DB >> 29383755

Hydrodynamic radius coincides with the slip plane position in the electrokinetic behavior of lysozyme.

Daniel R Grisham1, Vikas Nanda1.   

Abstract

The zeta potential (ζ) is the effective charge energy of a solvated protein, describing the magnitude of electrostatic interactions in solution. It is commonly used in the assessment of adsorption processes and dispersion stability. Predicting ζ from molecular structure would be useful to the structure-based molecular design of drugs, proteins, and other molecules that hold charge-dependent function while remaining suspended in solution. One challenge in predicting ζ is identifying the location of the slip plane (XSP ), a distance from the protein surface where ζ is theoretically defined. This study tests the hypothesis that the XSP can be estimated by the Stokes-Einstein hydrodynamic radius (Rh ), using globular hen egg white lysozyme as a model system. Although the XSP and Rh differ in their theoretical definitions, with the XSP being the position of the ζ during electrokinetic phenomena (e.g., electrophoresis) and the Rh being a radius pertaining to the edge of solvation during diffusion, they both represent the point where water and ions no longer adhere to a molecule. This work identifies the limited range of ionic strengths in which the XSP can be determined using diffusivity measurements and the Stokes-Einstein equation. In addition, a computational protocol is developed for determining the ζ from a protein crystal structure. At low ionic strengths, a hyperdiffusivity regime exists, requiring direct measurement of electrophoretic mobility to determine ζ. This work, therefore, supports a basic tenant of EDL theory that the electric double layer during diffusion and electrophoresis are equivalent in the Stokes-Einstein regime.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  Gouy-Chapman electric double layer; Stokes-Einstein relation; hydrodynamic radius; slip plane position; zeta potential

Mesh:

Substances:

Year:  2018        PMID: 29383755      PMCID: PMC6656557          DOI: 10.1002/prot.25469

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  35 in total

1.  Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

Authors:  J García De La Torre; M L Huertas; B Carrasco
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

Review 3.  Protein electrostatics: a review of the equations and methods used to model electrostatic equations in biomolecules--applications in biotechnology.

Authors:  Maria Teresa Neves-Petersen; Steffen B Petersen
Journal:  Biotechnol Annu Rev       Date:  2003

4.  Physical studies of lysozyme. I. Characterization.

Authors:  A J SOPHIANOPOULOS; C K RHODES; D N HOLCOMB; K E VAN HOLDE
Journal:  J Biol Chem       Date:  1962-04       Impact factor: 5.157

5.  PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.

Authors:  Todd J Dolinsky; Jens E Nielsen; J Andrew McCammon; Nathan A Baker
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

6.  The primary electroviscous effect in colloidal suspensions.

Authors:  F J Rubio-Hernández; F Carrique; E Ruiz-Reina
Journal:  Adv Colloid Interface Sci       Date:  2004-01-30       Impact factor: 12.984

Review 7.  Interactions between macromolecules and ions: The Hofmeister series.

Authors:  Yanjie Zhang; Paul S Cremer
Journal:  Curr Opin Chem Biol       Date:  2006-10-10       Impact factor: 8.822

8.  Measurement and interpretation of electrokinetic phenomena.

Authors:  A V Delgado; F González-Caballero; R J Hunter; L K Koopal; J Lyklema
Journal:  J Colloid Interface Sci       Date:  2007-03-21       Impact factor: 8.128

9.  Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process.

Authors:  Kim D Collins
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

10.  PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations.

Authors:  Todd J Dolinsky; Paul Czodrowski; Hui Li; Jens E Nielsen; Jan H Jensen; Gerhard Klebe; Nathan A Baker
Journal:  Nucleic Acids Res       Date:  2007-05-08       Impact factor: 16.971

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