| Literature DB >> 29382414 |
Marjolein J Poen1, Theo M Bestebroer1, Oanh Vuong1, Rachel D Scheuer1, Henk P van der Jeugd2,3, Erik Kleyheeg2,3, Dirk Eggink4,1, Pascal Lexmond1, Judith M A van den Brand1, Lineke Begeman1, Stefan van der Vliet1, Gerhard J D M Müskens5, Frank A Majoor6, Marion P G Koopmans1, Thijs Kuiken1, Ron A M Fouchier1.
Abstract
IntroductionHighly pathogenic avian influenza (HPAI) viruses of subtype H5N8 were re-introduced into the Netherlands by late 2016, after detections in south-east Asia and Russia. This second H5N8 wave resulted in a large number of outbreaks in poultry farms and the deaths of large numbers of wild birds in multiple European countries.Entities:
Keywords: Viral infections; avian influenza; emerging or re-emerging diseases; influenza virus; outbreaks; surveillance
Mesh:
Substances:
Year: 2018 PMID: 29382414 PMCID: PMC5801337 DOI: 10.2807/1560-7917.ES.2018.23.4.17-00449
Source DB: PubMed Journal: Euro Surveill ISSN: 1025-496X
Acknowledgements of authors, and originating and submitting laboratories providing the sequences used for phylogenetic analysis
| Isolate ID | Isolates name | Collection date | Originating laboratory | Submitting Laboratory | Authors |
|---|---|---|---|---|---|
| EPI_ISL_257700 | A/Mute_Swan/Czech_Republic/1813–17/2017 | 5 Feb 2017 | Not listed | State Veterinary Institute Prague | Nagy, A. |
| EPI_ISL_250885 | A/Mute_Swan/Czech_Republic/54–17_2/2017 | 2 Jan 2017 | Not listed | State Veterinary Institute Prague | Nagy, A. |
| EPI_ISL_248663 | A/Mallard/Czech_Republic/722–17_2/2017 | 15 Jan 2017 | Not listed | State Veterinary Institute Prague | Nagy, A. |
| EPI_ISL_247713 | A/Tufted_Duck/Denmark/17740–1/2016 | 8 Nov 2016 | Technical University of Denmark | Animal and Plant Health Agency (APHA) | Hjulsager CK, Krog JS, Larsen LE, Kvisgaard LK, Essen S |
| EPI_ISL_238197 | A/Mute_Swan/Croatia/78/2016 | 12 Nov 2016 | Not listed | Croatian Veretinary Institute | Not listed |
| EPI_ISL_238196 | A/Mute_Swan/Croatia/70/2016 | 30 Oct 2016 | Not listed | Croatian Veretinary Institute | Not listed |
| EPI_ISL_237945 | A/Tufted_Duck/Germany/AR8459-L01988/2016 | 8 Nov 2016 | Not listed | Friedrich-Loeffler-Institut | Not listed |
| EPI_ISL_237944 | A/Tufted_Duck/Germany/AR8444-L01987/2016 | 7 Nov 2016 | Not listed | Friedrich-Loeffler-Institut | Not listed |
| EPI_ISL_237732 | A/Tufted_Duck/Germany-SH/R8446/2016 | 7 Nov 2016 | Not listed | Friedrich-Loeffler-Institut | Not listed |
| EPI_ISL_238039 | A/Chicken/Germany-SH/R8758/2016 | 11 Nov 2016 | Not listed | Friedrich-Loeffler-Institut | Not listed |
| EPI_ISL_237921 | A/Wild_Duck/Poland/82A/2016 | 2 Nov 2016 | Not listed | National Veterinary Research Institut Poland | Świętoń E, Śmietanka K |
| EPI_ISL_175535 | A/MuteSwan/Sweden/SVA150313KU0141/SZ543/2015 | 5 Mar 2015 | National Veterinary Institute, Sweden | National Veterinary Institute, Sweden | Zohari S, Ullman K, Olofsson A |
| EPI_ISL_238896 | A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 | 21 Nov 2016 | National Veterinary Institute, Sweden | National Veterinary Institute, Sweden | Not listed |
| EPI_ISL_231685 | A/Black-headed_Gull/Tyva/41/2016 | 25 May 2016 | State Research Center of Virology and Biotechnology (VECTOR) | WHO National Influenza Centre Russian Federation | Fadeev A, Komissarov A, Egorova A, Sintsova K, Musaeva T, Susloparov I, Marchenko V, Ryzhikov A |
| EPI_ISL_231684 | A/Wild_Duck/Tyva/35/2016 | 25 May 2016 | State Research Center of Virology and Biotechnology (VECTOR) | WHO National Influenza Centre Russian Federation | Fadeev A, Komissarov A, Egorova A, Sintsova K, Musaeva T, Susloparov I, Marchenko V, Ryzhikov A |
| EPI_ISL_224580 | A/Great_Crested_Grebe/Tyva/341/2016 | 25 May 2016 | Research Institute of Experimental and Clinical Medicine | Research Institute of Experimental and Clinical Medicine | Sharshov K, Kurskaya O, Sobolev I, Alekseev A, Alikina T, Kabilov M, Shestopalov A |
| EPI_ISL_234057 | A/grey_heron/Uvs-Nuur_Lake/20/2016 | 25 May 2016 | Research Institute of Experimental and Clinical Medicine | Research Institute of Experimental and Clinical Medicine | Sharshov K, Kurskaya O, Sobolev I, Alekseev A, Shestopalov A |
| EPI_ISL_234058 | A/common_tern/Uvs-Nuur_Lake/26/2016 | 25 May 2016 | Research Institute of Experimental and Clinical Medicine | Research Institute of Experimental and Clinical Medicine | Sharshov K, Kurskaya O, Sobolev I, Alekseev A, Alikina T, Kabilov M, Shestopalov A |
| EPI_ISL_269601 | A/Eurasian_Herring_Gull/Netherlands/2/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268916 | A/Caspian _Gull/Netherlands/1/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_255910 | A/Mew Gull/Netherlands/1/2016 | 23 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269602 | A/Lesser_Black-backed_Gull/Netherlands/1/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269697 | A/Great_Black-backed_Gull/Netherlands/2/2016 | 23 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269599 | A/Great_Black-backed_Gull/Netherlands/4/2016 | 14 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269598 | A/Great_Black-backed_Gull/Netherlands/3/2016 | 23 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269597 | A/Great_Black-backed_Gull/Netherlands/1/2016 | 23 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_255892 | A/Great Black-backed Gull/Netherlands/2/2016 | 23 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269600 | A/Great_Crested_Grebe/Netherlands/2/2016 | 21 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269696 | A/Eurasian_Wigeon/Netherlands/23/2016 | 05 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269694 | A/Eurasian_Wigeon/Netherlands/1/2016 | 04 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ,Müskens,G.J.D.M, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269596 | A/Eurasian_Wigeon/Netherlands/13/2016 | 14 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269595 | A/Eurasian_Wigeon/Netherlands/12/2016 | 14 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269594 | A/Eurasian_Wigeon/Netherlands/22/2016 | 14 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269593 | A/Eurasian_Wigeon/Netherlands/11/2016 | 13 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269592 | A/Eurasian_Wigeon/Netherlands/8/2016 | 09 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269591 | A/Eurasian_Wigeon/Netherlands/6/2016 | 09 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268937 | A/Eurasian_Wigeon/Netherlands/10/2016 | 08 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_255914 | A/Eurasian Wigeon/Netherlands/9/2016 | 04 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_255912 | A/Eurasian Wigeon/Netherlands/4/2016 | 09 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269703 | A/Eurasian_Wigeon/Netherlands/25/2016 | 05 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269695 | A/Eurasian_Wigeon/Netherlands/21/2016 | 05 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269692 | A/Mallard/Netherlands/3/2017 | 11 Jan 2017 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269604 | A/Mallard/Netherlands/1/2017 | 07 Jan 2017 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269603 | A/Mallard/Netherlands/51/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_255913 | A/Mallard/Netherlands/2/2017 | 07 Jan 2017 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268927 | A/Common_Buzzard/Netherlands/1/2016 | 07 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_255891 | A/Tufted Duck/Netherlands/1/2016 | 25 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268866 | A/Back-headed_Gull/Netherlands/9/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268800 | A/Black-headed_Gull/Netherlands/17/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268799 | A/Back-headed_Gull/Netherlands/8/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_268929 | A/Common_Eider/Netherlands/2/2016 | 20 Dec 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
| EPI_ISL_269693 | A/Common_Pochard/Netherlands/1/2016 | 25 Nov 2016 | Erasmus Medical Center | Erasmus Medical Center | Poen,MJ, Van Der Jeugd,HP, Vuong,O, Scheuer,RD, Fouchier,RAM et al. |
Wild bird species sampled for virus detection in the Netherlands before and during the second wave of highly pathogenic avian influenza H5N8 virus in Europe and results of virological assays, February 2016–March 2017 (n = 10,726)
| Order | Family | Species | 1 February 2016–7 November 2016 | 8 November 2016–31 March 2017 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Alive without clinical signs | Alive without clinical signs | Found dead | ||||||||||||
| Number of birds | Number of birds | Number of birds | Pathotype | Number of birds | Number of birds | Number of birds | Pathotype | Number of birds | Number of birds | Number of birds | Pathotype | |||
|
| Ducks | Common eider | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI |
| Common pochard | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 1 | 1 | n.i. | ||
| Common shelduck | 2 | 0 | 0 | NA | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Domestic duck | 0 | 0 | 0 | NA | 1 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Egyptian goose | 30 | 0 | 0 | NA | 17 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Eurasian teal | 46 | 21 | 0 | NA | 42 | 5 | 1 | 1x LPAI | 0 | 0 | 0 | NA | ||
| Eurasian wigeon | 639 | 339 | 10 | 6x n.i., 4x LPAI | 2,634 | 118 | 37 | 14x HPAI, 23x n.i. | 7 | 7 | 7 | 7x HPAI | ||
| Gadwall | 131 | 65 | 0 | NA | 11 | 1 | 1 | 1x n.i. | 1 | 1 | 0 | NA | ||
| Garganey | 2 | 2 | 0 | NA | 0 | NA | 0 | 0 | 0 | NA | ||||
| Greater scaup | 1 | 0 | 0 | NA | 2 | 1 | 0 | NA | 0 | 0 | 0 | NA | ||
| Mallard | 3,169 | 555 | 20 | 4x n.i., 16x LPAI | 1,824 | 338 | 78 | 17x HPAI, 5x LPAI, 56x n.i. | 3 | 3 | 2 | 2x HPAI | ||
| Northern pintail | 12 | 9 | 0 | NA | 6 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Northern shoveler | 14 | 4 | 0 | NA | 3 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Tufted duck | 2 | 1 | 0 | NA | 2 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI | ||
| Geese | Barnacle goose | 589 | 0 | 0 | NA | 0 | NA | 0 | 0 | 0 | NA | |||
| Bean goose | 0 | 0 | 0 | NA | 1 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Canada goose | 23 | 0 | 0 | NA | 3 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Great white-fronted goose | 27 | 0 | 0 | NA | 40 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Greylag goose | 310 | 3 | 1 | 1x LPAI | 0 | NA | 0 | 0 | 0 | NA | ||||
| Swans | Bewick's swan | 0 | 0 | 0 | NA | 92 | 3 | 0 | NA | 0 | 0 | 0 | NA | |
| Mute swan | 0 | 0 | 0 | NA | 36 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Whooper swan | 0 | 0 | 0 | NA | 3 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
|
| Gulls | Black-headed gull | 432 | 59 | 0 | NA | 287 | 2 | 0 | NA | 4 | 4 | 3 | 3x HPAI |
| Caspian gull | 0 | 0 | 0 | NA | 1 | 0 | 0 | NA | 1 | 1 | 0 | NA | ||
| Eurasian herring gull | 24 | 0 | 0 | NA | 20 | 1 | 0 | NA | 2 | 2 | 2 | 1x HPAI, 1x n.i. | ||
| Great black-backed gull | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 8 | 8 | 5 | 5x HPAI | ||
| Lesser black-backed gull | 66 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI | ||
| Mew gull | 2 | 0 | 0 | NA | 13 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI | ||
| Yellow-legged gull | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 0 | 0 | NA | ||
|
| Coots | Common coot | 2 | 0 | 0 | NA | 100 | 0 | 0 | NA | 0 | 0 | 0 | NA |
| Common moorhen | 0 | 0 | 0 | NA | 4 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
| Water rail | 0 | 0 | 0 | NA | 20 | 0 | 0 | NA | 0 | 0 | 0 | NA | ||
|
| Ardeidae | Grey heron | 0 | 0 | 0 | NA | 3 | 0 | 0 | NA | 0 | 0 | 0 | NA |
|
| Grebes | Great crested grebe | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI |
|
| Cormorants | Great cormorant | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 0 | 0 | NA |
|
| Corvidae | Eurasian magpie | 0 | 0 | 0 | NA | 1 | 0 | 0 | NA | 0 | 0 | 0 | NA |
|
| Falcons | Peregrine falcon | 0 | 0 | 0 | NA | 0 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI |
|
| Accipitridae | Common buzzard | 0 | 0 | 0 | NA | 1 | 1 | 1 | 1x HPAI | 1 | 1 | 1 | 1x HPAI |
| Total | NA | NA | 5,523 | 1,058 | 31 | NA | 5,167 | 470 | 118 | 32x HPAI | 36 | 34 | 27 | 25x HPAI |
AIV: avian influenza virus; HPAI: highly pathogenic avian influenza; LPAI: low pathogenic avian influenza; NA: not applicable; n.i.: not identifiable because of low virus load.
Figure 1Overview of wild bird surveillance activities in the Netherlands between 1 February 2016 and 31 March 2017, with intensified surveillance from 13 November–31 December 2016 and 8–19 February 2017
Wild bird species sampled in the Netherlands for antibody detection in response to the second wave of highly pathogenic avian influenza (HPAI) H5N8 virus in Europe, 2016/2017 (n = 459) and those showing HPAI H5 clade 2.3.4.4-specific antibodies (n = 20) based on repeated haemagglutination inhibition assays (HI), March 2016–February 2017
| Order | Family | Species | Number of individuals | |||||
|---|---|---|---|---|---|---|---|---|
| 1 March 2016 | 23 October 2016 | 13 November 2016–8 February 2017 | ||||||
| Tested | H5 clade 2.3.4.4- specific antibodies | Tested | H5 clade 2.3.4.4- specific antibodies | Tested | H5 clade 2.3.4.4- specific antibodies | |||
|
| Ducks | Egyptian goose | 0 | 0 | 0 | 0 | 10 | 0 |
| Eurasian teal | 0 | 0 | 0 | 0 | 22 | 0 | ||
| Eurasian wigeon | 28 | 2 | 41 | 1 | 63 | 2 | ||
| Gadwall | 0 | 0 | 0 | 0 | 5 | 0 | ||
| Mallard | 0 | 0 | 0 | 0 | 72 | 11 | ||
| Northern pintail | 0 | 0 | 0 | 0 | 6 | 0 | ||
| Tufted duck | 0 | 0 | 0 | 0 | 1 | 0 | ||
| Swans | Bewick's swan | 0 | 0 | 0 | 0 | 20 | 0 | |
| Mute swan | 0 | 0 | 0 | 0 | 24 | 3 | ||
| Whooper swan | 0 | 0 | 0 | 0 | 3 | 0 | ||
|
| Gulls | Black-headed gull | 0 | 0 | 0 | 0 | 88 | 1 |
| Caspian gull | 0 | 0 | 0 | 0 | 1 | 0 | ||
| Eurasian herring gull | 0 | 0 | 0 | 0 | 15 | 0 | ||
| Mew gull | 0 | 0 | 0 | 0 | 7 | 0 | ||
|
| Rails | Common coot | 0 | 0 | 0 | 0 | 35 | 0 |
| Water rail | 0 | 0 | 0 | 0 | 16 | 0 | ||
|
| Corvidae | Eurasian magpie | 0 | 0 | 0 | 0 | 1 | 0 |
|
| Ardeidae | Grey heron | 0 | 0 | 0 | 0 | 1 | 0 |
| Total | NA | NA | 28 | 2 | 41 | 1 | 390 | 17 |
NA: not applicable.
Overview of wild birds or wild birds’ droppings, which were sampled in the Netherlands during active surveillance, and positive for highly pathogenic avian influenza H5N8 virus, 23 November 2016–28 January 2017 (n = 32 birds)
| Species | Location | Status | Date | Number of animals |
|---|---|---|---|---|
| Eurasian wigeon | Echtenerburg | Dropping | 23 November 2016 | 1 |
| Eurasian wigeon | Warder | Live without clinical signs | 04 December 2016 | 3 |
| Common buzzard | Hippolytushoef | Live without clinical signs | 07 December 2016 | 1 |
| Eurasian wigeon | Oud Alblas | Live without clinical signs | 08 December 2016 | 1 |
| Eurasian wigeon | Oud Alblas | Live without clinical signs | 12 December 2016 | 1 |
| Eurasian wigeon | Nijkerk | Dropping | 12 December 2016 | 3 |
| Eurasian wigeon | Nijkerk | Dropping | 14 December 2016 | 2 |
| Eurasian wigeon | Nijkerk | Dropping | 21 December 2016 | 3 |
| Mallard | Oud Alblas | Live without clinical signs | 07 January 2017 | 6 |
| Mallard | Oud Alblas | Live without clinical signs | 09 January 2017 | 4 |
| Mallard | Oud Alblas | Live without clinical signs | 10 January 2017 | 2 |
| Mallard | Oud Alblas | Live without clinical signs | 11 January 2017 | 2 |
| Mallard | Oud Alblas | Live without clinical signs | 24 January 2017 | 1 |
| Mallard | Oud Alblas | Live without clinical signs | 25 January 2017 | 1 |
| Mallard | Oud Alblas | Live without clinical signs | 28 January 2017 | 1 |
Figure 2Tanglegram of highly pathogenic avian influenza H5 clade 2.3.4.4 virus (left) and the accompanying N8 genes (right) based on 250 bootstraps
Search results for sequencesa with high similarity to the eight genes found in the full genomes of six highly pathogenic avian influenza H5N8 virus isolates from the Netherlands, 2016/17
| Gene | BLAST result | Identity | Classification |
|---|---|---|---|
| PB2 | [6/6] A/duck/Bangladesh/26920/2015(H3N6) | >98,7% | LPAI |
| PB1 | [5/6] A/chicken/Hunan/S1267/2010(H4N6) | >97,7% | LPAI |
| [1/6] A/duck/Mongolia/179/2015(H3N8) | 97,5% | LPAI | |
| PA | [6/6] A/duck/Mongolia/129/2015(H3N3) | >98,0% | LPAI |
| HA | [6/6] A/duck/Eastern China/S1109/2014(H5N8) | >98,7% | HPAI H5 clade 2.3.4.4 |
| NP | [6/6] A/Mallard/Netherlands/15/2011(H6N8) | >99,2% | LPAI |
| NA | [6/6] A/duck/Eastern China/S1109/2014(H5N8) | >98,6% | HPAI H5 clade 2.3.4.4 |
| MP | [6/6] A/duck/Mongolia/179/2015(H3N8) | >98,1% | LPAI |
| NS | [3/6] A/duck/Eastern China/S1109/2014(H5N8) | >98.8% | HPAI H5 clade 2.3.4.4 |
| [3/6] A/goose/Yangzhou/0420/2014(H5N8) | >97.9% | HPAI H5 clade 2.3.4.4 |
BLAST: basic local alignment search tool; HA: haemagglutinin; MP: matrix protein; NA: neuraminidase; NP: nucleoprotein; NS: non-structural protein; PA or PB: polymerases (PA, PB2, PB1).
a Searches were carried out using the National Center for Biotechnology Information (NCBI) nucleotide-BLAST.
Details of the results on low pathogenic (LPAI) H5- and highly pathogenic avian influenza (HPAI) H5 clade 2.3.4.4-specific antibody positive sera using haemagglutination inhibition assays and the resulting HPAI/LPAI bias, Netherlands, 2016/17 (n = 29)
| Sample ID | Species | Collection date | LPAI | HPAI H5 clade 2.3.4.4 | Bias |
|---|---|---|---|---|---|
| C320-297 | Black-headed gull | 29 November 2016 | <10 | 20 | HPAI |
| 320-312 | Black-headed gull | 05 December 2016 | <10 | 20a | HPAI |
| 309-9 | Eurasian wigeon | 01 March 2016 | <10 | 20 | HPAI |
| 309-13 | Eurasian wigeon | 01 March 2016 | <10 | 10 | Ambiguous |
| 309-23 | Eurasian wigeon | 01 March 2016 | <10 | 20a | HPAI |
| C309-51 | Eurasian wigeon | 23 October 2016 | 40 | 40 | Ambiguous |
| 318-57 | Eurasian wigeon | 04 December 2016 | <10 | 10a | Ambiguous |
| 318-63 | Eurasian wigeon | 04 December 2016 | 40 | 640 | HPAI |
| 318-70 | Eurasian wigeon | 04 December 2016 | 20 | <10 | LPAI |
| 318-75 | Eurasian wigeon | 04 December 2016 | 10 | 80 | HPAI |
| 320-55 | Mallard | 09 December 2016 | 320 | 40 | LPAI |
| 314-1813 | Mallard | 08 February 2017 | <10 | 20 | HPAI |
| 314-1815 | Mallard | 08 February 2017 | 30 | 20 | Ambiguous |
| 314-1817 | Mallard | 08 February 2017 | 40 | 20 | Ambiguous |
| 314-1819 | Mallard | 08 February 2017 | <10 | 40 | HPAI |
| 314-1820 | Mallard | 08 February 2017 | 30 | <10 | LPAI |
| 314-1821 | Mallard | 08 February 2017 | <10 | 10 | Ambiguous |
| 314-1823 | Mallard | 08 February 2017 | 40 | <10 | LPAI |
| 314-1824 | Mallard | 08 February 2017 | <10 | 120 | HPAI |
| 314-1825 | Mallard | 08 February 2017 | 40 | 20 | Ambiguous |
| 314-1826 | Mallard | 08 February 2017 | 40 | 40 | Ambiguous |
| 314-1827 | Mallard | 08 February 2017 | 10 | <10 | Ambiguous |
| 314-1832 | Mallard | 08 February 2017 | 10 | 20 | Ambiguous |
| 314-1835 | Mallard | 08 February 2017 | 30 | 20 | Ambiguous |
| 320-295 | Mute swan | 05 December 2016 | <10 | 30 | HPAI |
| 320-641 | Mute swan | 07 December 2016 | <10 | 30 | HPAI |
| 320-699 | Mute swan | 14 December 2016 | 30 | <10 | LPAI |
| 320-729 | Mute swan | 15 December 2016 | <10 | 20 | HPAI |
| 320-355 | Whooper Swan | 20 December 2016 | 80 | <10 | LPAI |
HPAI H5 clade 2.3.4.4: highly pathogenic avian influenza A/Great-black backed gull/Netherlands/3/2016 (H5N8); LPAI: low pathogenic avian influenza A/Mallard/Netherlands/3/1999 (H5N2).
a Titre could not be confirmed in a second haemagglutination inhibition HI assay.
T Overview of highly pathogenic avian influenza H5 clade 2.3.4.4-specific antibody incidence in the Netherlands based on haemagglutination inhibition assays starting from the first wave of this virus in 2014/2015 up to February 2017
| Species | 2014/15a | 2015/16 b | 2016/17c | |||
|---|---|---|---|---|---|---|
| Positive/total | Percentage | Positive/total | Percentage | Positive/total | Percentage | |
| Eurasian wigeon | 12/78 | 15.4% | 5/73 | 6.8% | 3/104 | 2.9% |
| Lesser white-fronted goose | 1/3 | 33.3% | 0 | U | 0 | U |
| Mute swan | 29/88 | 33.0% | 5/24 | 20.8% | 3/24 | 12.5% |
| Common coot | 1/84 | 1.2% | 1/22 | 4.5% | 0/35 | 0% |
| Black-headed gull | 0/262 | 0.0% | 0/31 | U | 1/88 | 1.1% |
| Mallard | 0/93 | 0.0% | 0/18 | U | 11/72 | 15.3% |
| Egyptian goose | 0/62 | 0.0% | 1/28 | 3.6% | 0/10 | 0% |
| Total | 43/940 | 4.6% | 12/347 | 3.5% | 18/431 | 4.2% |
U: unknown.
a Data previously published [10].
b Data (partly) previously published [10] and supplemented with Eurasian wigeon data from this study (n = 28) from 1 March 2016.
c Data obtained in the current study from 23 October 2016 to 8 February 2017.