Literature DB >> 29381149

Meet some code-breakers of noncoding RNAs.

Vivien Marx1.   

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Year:  2018        PMID: 29381149     DOI: 10.1038/nmeth.4594

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  7 in total

1.  Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Authors:  Toshiyuki Shiraki; Shinji Kondo; Shintaro Katayama; Kazunori Waki; Takeya Kasukawa; Hideya Kawaji; Rimantas Kodzius; Akira Watahiki; Mari Nakamura; Takahiro Arakawa; Shiro Fukuda; Daisuke Sasaki; Anna Podhajska; Matthias Harbers; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

2.  An atlas of human long non-coding RNAs with accurate 5' ends.

Authors:  Chung-Chau Hon; Jordan A Ramilowski; Jayson Harshbarger; Nicolas Bertin; Owen J L Rackham; Julian Gough; Elena Denisenko; Sebastian Schmeier; Thomas M Poulsen; Jessica Severin; Marina Lizio; Hideya Kawaji; Takeya Kasukawa; Masayoshi Itoh; A Maxwell Burroughs; Shohei Noma; Sarah Djebali; Tanvir Alam; Yulia A Medvedeva; Alison C Testa; Leonard Lipovich; Chi-Wai Yip; Imad Abugessaisa; Mickaël Mendez; Akira Hasegawa; Dave Tang; Timo Lassmann; Peter Heutink; Magda Babina; Christine A Wells; Soichi Kojima; Yukio Nakamura; Harukazu Suzuki; Carsten O Daub; Michiel J L de Hoon; Erik Arner; Yoshihide Hayashizaki; Piero Carninci; Alistair R R Forrest
Journal:  Nature       Date:  2017-03-01       Impact factor: 49.962

3.  Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.

Authors:  Charles Plessy; Nicolas Bertin; Hazuki Takahashi; Roberto Simone; Md Salimullah; Timo Lassmann; Morana Vitezic; Jessica Severin; Signe Olivarius; Dejan Lazarevic; Nadine Hornig; Valerio Orlando; Ian Bell; Hui Gao; Jacqueline Dumais; Philipp Kapranov; Huaien Wang; Carrie A Davis; Thomas R Gingeras; Jun Kawai; Carsten O Daub; Yoshihide Hayashizaki; Stefano Gustincich; Piero Carninci
Journal:  Nat Methods       Date:  2010-06-13       Impact factor: 28.547

4.  Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types.

Authors:  Aristeidis G Telonis; Rogan Magee; Phillipe Loher; Inna Chervoneva; Eric Londin; Isidore Rigoutsos
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

5.  Small non-coding RNA transcriptome of the NCI-60 cell line panel.

Authors:  Erin A Marshall; Adam P Sage; Kevin W Ng; Victor D Martinez; Natalie S Firmino; Kevin L Bennewith; Wan L Lam
Journal:  Sci Data       Date:  2017-10-24       Impact factor: 6.444

6.  The Human Cell Atlas.

Authors:  Aviv Regev; Sarah A Teichmann; Eric S Lander; Ido Amit; Christophe Benoist; Ewan Birney; Bernd Bodenmiller; Peter Campbell; Piero Carninci; Menna Clatworthy; Hans Clevers; Bart Deplancke; Ian Dunham; James Eberwine; Roland Eils; Wolfgang Enard; Andrew Farmer; Lars Fugger; Berthold Göttgens; Nir Hacohen; Muzlifah Haniffa; Martin Hemberg; Seung Kim; Paul Klenerman; Arnold Kriegstein; Ed Lein; Sten Linnarsson; Emma Lundberg; Joakim Lundeberg; Partha Majumder; John C Marioni; Miriam Merad; Musa Mhlanga; Martijn Nawijn; Mihai Netea; Garry Nolan; Dana Pe'er; Anthony Phillipakis; Chris P Ponting; Stephen Quake; Wolf Reik; Orit Rozenblatt-Rosen; Joshua Sanes; Rahul Satija; Ton N Schumacher; Alex Shalek; Ehud Shapiro; Padmanee Sharma; Jay W Shin; Oliver Stegle; Michael Stratton; Michael J T Stubbington; Fabian J Theis; Matthias Uhlen; Alexander van Oudenaarden; Allon Wagner; Fiona Watt; Jonathan Weissman; Barbara Wold; Ramnik Xavier; Nir Yosef
Journal:  Elife       Date:  2017-12-05       Impact factor: 8.140

7.  High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.

Authors:  Julien Lagarde; Barbara Uszczynska-Ratajczak; Silvia Carbonell; Sílvia Pérez-Lluch; Amaya Abad; Carrie Davis; Thomas R Gingeras; Adam Frankish; Jennifer Harrow; Roderic Guigo; Rory Johnson
Journal:  Nat Genet       Date:  2017-11-06       Impact factor: 38.330

  7 in total
  1 in total

1.  miR-106b-5p promotes cell proliferation and cell cycle progression by directly targeting CDKN1A in osteosarcoma.

Authors:  Chuan He; Hongwei Chen; Yan Liu; Xiaolin Li; Chaoju Zhang; Qunyan Qin; Qixiong Pang
Journal:  Exp Ther Med       Date:  2020-03-06       Impact factor: 2.447

  1 in total

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