| Literature DB >> 29379554 |
Edyta Szymańska1, Sylwia Szymańska2, Grażyna Truszkowska3, Elżbieta Ciara4, Maciej Pronicki2, Yoon S Shin5, Teodor Podskarbi6, Alina Kępka7, Mateusz Śpiewak8, Rafał Płoski9, Zofia T Bilińska10, Dariusz Rokicki1.
Abstract
Entities:
Year: 2017 PMID: 29379554 PMCID: PMC5778435 DOI: 10.5114/aoms.2018.72246
Source DB: PubMed Journal: Arch Med Sci ISSN: 1734-1922 Impact factor: 3.318
Figure 1Histological findings in patients 1 and 2. A – Patient 1: explanted liver showing cirrhosis and extensive amylopectin deposits. PAS stain. Original magnification 200×. B – Patient 1: Autopsy, heart muscle with numerous intrasarcoplasmic PAS-positive deposits. PAS stain. Original magnification 200×. C – Patient 1: Autopsy, brain nervous tissue with numerous globular PAS-positive deposits located in the white matter. Original magnification 400×. D – Patient 2: Core needle liver biopsy. Intrahepatocytic amylopectin deposits. PAS stain. Original magnification 200×
Activities of enzymes involved in synthesis and degradation of glycogen and glycogen amount in morphotic elements of the blood in three patients with molecularly confirmed GSD type IV
| Activity | Patient 1 | Patient 2 | Patient 3 |
|---|---|---|---|
| Liver: | |||
| Brancher (ref. 0.3–3.0) | 0.0 | 0.0 | – |
| Debrancher (ref. 0.17–0.72) | – | 0.21 | – |
| Fibroblasts: | |||
| Brancher (ref. 0.5–3.0) | 1.7 | 0.16 | 0.30 |
| Leukocytes: | |||
| Brancher (ref. 0.22–0.81) | 0.11 | 0.04 | 0.20 |
| Debrancher (ref. 26.8–105): | |||
| Phosphorylase a with AMP (ref. 1.0–3.2) | – | 1.2 | 2.1 |
| Phosphorylase a without AMP (ref. 0.46–2.2) | – | – | 1.24 |
| – | |||
| FBP-1,6-ase (ref. 0.89–15.9) | – | 4.6 | – |
| Erythrocytes | – | ||
| Glycogen (ref. 5.7–135) | – | 16.7 | 112 |
| Phosphorylase b kinase (ref. 8.6–45.9) | |||
| Liver | |||
M – mother, F – father, B – brother, c – control, FBP-1,6-ase – fructose-1,6-biphosphatase;
Units brancher – μmol Pi/min/mg protein, debrancher in liver (leukocytes) – μmol glucose/mg protein/hour (nmol glucose/mg protein/h), phosphorylase a (with, without ± AMP) – μmol Pi/h/mg protein, glycogen – μg/g hemoglobin, phosphorylase b kinase – μmol Pi/min/g hemoglobin. FBP-1,6-ase – μmol/min/mg protein.
**Normal ranges of brancher in Laboratory in Munich: leukocytes 0.22–0.81; fibroblasts 0.5–3.0; liver 0.3–3.
Figure 212-lead ECG of patient 3 which shows sinus rhythm, short PR, left atrial enlargement and ST-T segment changes in lateral leads
Figure 3Late gadolinium enhancement images of patient 3 show hyperintense areas in midmyocardial basal (A) and partly medial segments of the interventricular septum (B)
Figure 4Integrative Genomics Viewer view of GBE1 pathogenic variants in patient 1 (A, B) and patient 3 (C, D) by whole-exome sequencing
Details of molecular variants identified in GBE1 in three patients with GSD type IV
| Variable | Patient 1 | Patient 2 | Patient 3 | |||
|---|---|---|---|---|---|---|
| Mutant allele 1 | Mutant allele 2 | Mutant allele 1 | Mutant allele 2 | Mutant allele 1 | Mutant allele 2 | |
| Chromosome/rs | 3/rs1042498 | 3/– | 3 | 3 | 3/rs137852888 | 3/rs754607405 |
| RefSeq cDNA | NM_000158.3 | NM_000158.3 | NM_000158.3 | NM_000158.3 | ||
| Nucleotide change | c.263G>A | c.1621A>T | IVS5 + 2t>c | c.1570C>T | c.2056T>C | |
| Exon | 2 | 13 | 12 | 16 | ||
| IGV reads | 12/28 | 6/11 | ND | ND | 14/49 | 27/68 |
| RefSeq protein | NP_000149 | NP_000149 | NP_000149 | NP_000149 | ||
| Amino acid change | p.(Cys88Tyr) | p.(Asn541Tyr) | p.(His528Arg) | p.(Arg524 | p.(Tyr686His) | |
| Mutation: | ||||||
| Type | Missense | Missense | Nonsense | Missense | ||
| Stage | Heterozygous | Heterozygous | Heterozygous | Heterozygous | Heterozygous | Heterozygous |
| Status | Novel | Novel | Known (PMID 8613547, 15452297) | Novel | ||
| Parental origin | Paternal | Maternal | Maternal | Paternal | ||
| Pathogenicity prediction: | ||||||
| CADD | 1.23 | 18.49 | 41.0 | 21.9 | ||
| PolyPhen2 | Benign | Probably damaging | – | Probably damaging | ||
| Mutation | High (functional) | Neutral (functional) | – | High | ||
| LRT | Deleterious | Deleterious | Deleterious | Deleterious | ||
| MutationTaster | Disease causing | Disease causing | Disease causing automatic | Disease causing | ||
| SIFT | Tolerated | Damaging | ||||
| MAF data | ||||||
| ExAC 60,706 | 0.000014 | 0 | 0.00001685 | 0.00000817 | ||
| ESP 6500 | 0 | 0 | 0.00016 | 0 | ||
| EUR 1000 | 0 | 0 | 0 | 0 | ||
| POL 400 | 0 | 0 | 0 | 0 | ||
| Depth of WES | 27 | 11 | 66 | 49 | ||
Higher scores are more deleterious
MAF – minor allele frequency; ExAC – exome aggregation consortium (http://exac.broadinstitute.org); EUR 1000 – 1000 genomes project (http://www.1000genomes.org/); ESP 6500 – exome sequencing project (http://evs.gs.washington.edu/EVS); POL400 – project of 400 exomes from Polish individuals with unrelated diseases (unpublished).CADD – Combined Annotation Dependent Depletion (http://cadd.gs.washington.edu/home); PolyPhen-2 – Polymorphism Phenotyping v2 (http://genetics.bwh.harvard.edu/pph2/index.shtml); MutationAssessor (http://mutationassessor.org); LRT – Likelihood Ratio Test (http://www.genetics.wustl.edu/jflab/lrt_query.html).
Clinical and laboratory characteristics at diagnosis of 3 patients with mutations in GBE1 gene
| Patient | Clinical presentation | Laboratory abnormalities |
|---|---|---|
| 1 | Severe course: hepato-splenomegaly, neurological involvement, | Elevated serum: |
| 2 | Hepatomegaly without enlarged spleen | Hypertransaminasemia |
| 3 | Cardiological presentation: dilated cardiomyopathy and mild arrhythmia | No specific laboratory abnormalities |
Figure 5Missense mutations found in catalytic domain of GBE, and clustered in exons 5–8 and 12–13