| Literature DB >> 29379546 |
Anamaria Todoran Butilă1, Ancuta Zazgyva2, Anca Ileana Sin2, Elisabeta Racoș Szabo3, Mariana Cornelia Tilinca2.
Abstract
INTRODUCTION: This case-control study aimed to assess two single nucleotide polymorphisms of the gene encoding the GABRG2 protein - GABRG2 (3145 G>A) and GABRG2 rs 211037 Asn196Asn (C588T) - in a cohort of pediatric patients from Romania, and evaluate their possible impact on drug-resistant forms of generalized epilepsy and recurrent febrile seizures.Entities:
Keywords: GABAA receptors; febrile convulsions; idiopathic epilepsy
Year: 2016 PMID: 29379546 PMCID: PMC5778423 DOI: 10.5114/aoms.2016.63739
Source DB: PubMed Journal: Arch Med Sci ISSN: 1734-1922 Impact factor: 3.318
Sequences of primers, restriction enzyme and length of obtained fragments
| SNP | Sequencing primer | Fragments | Restriction enzyme |
|---|---|---|---|
| GABGRG2 | Fw: 5’-AGA AAT TTA CCA ACT GGT CTA GCC GG-3’ | AA | Ncil |
| GABGRG2 | Fw: 5’-GAG TGC CAA TTA CAA TTG CAA AA-3’ | CC: 122 bp | Apol |
Figure 1A – Fragment lengths after enzymatic digestion (GABRG2 C588T); B – genotypes for GABRG2 locus C588T, after amplification, enzymatic digestion (with ApoI) and electrophoresis in agarose gel
M – marker; 1, 2, 4, 5, 6, 7, 9 – CC, 8 – CT, 3 – TT.
Figure 2A – Genotype frequency for the GABRG2 G>A polymorphism in IGE, B – genotype frequency for the GABRG2 Asn196Asn polymorphism in IGE, C – genotype frequency for the GABRG2 Asn196Asn polymorphism in FS
Allele frequency and genotype distribution of GABRG2 C588T in the epilepsy, febrile seizures and control groups
| Genotype | Generalized epilepsy vs. control | Febrile seizures vs. control |
|---|---|---|
| CC vs. CT |
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| CC vs. TT |
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| C vs. T |
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| CC vs. CT + TT |
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| TT vs. CT + CC |
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Statistically significant, OR – odds ratio, CI – confidence interval.
Alleles and genotype distribution for GABRG2 in patients from group 1 and controls, and genotype and allele frequency in patients with recurrent seizures
| Genotype 3145 GABRG2 | Group 1 | Control group | χ2 test | |
|---|---|---|---|---|
| AA | 27 (45.0) | 38 (24.8) | – | |
| AG | 16 (26.7) | 78 (50.9) |
| |
| GG | 17 (28.3) | 37 (24.1) |
| |
| A | 70 (58.3) | 154 (50.3) | – | |
| G | 50 (41.7) | 152 (49.7) |
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| GG vs. AG + AA | 17/43 | 37/116 |
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| AA vs. AG + GG | 27/33 | 38/115 |
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| GABRG2 C588T: | ||||
| CC | 1 (9.1) | 30 (61.2) | – | |
| CT | 7 (63.6) | 17 (34.7) |
| |
| TT | 3 (27.3) | 2 (4.1) |
| |
| C | 9 (40.9) | 77 (78.6) | – | |
| T | 13 (59.1) | 21 (21.4) |
| |
| GABRG2 G>A 3145: | ||||
| AA | 6 (54.5) | 21 (52.8) | – | |
| AG | 0 (0.0) | 12 (24.5) | – | |
| GG | 5 (45.5) | 16 (32.7) |
| |
| A | 12 (54.5) | 54 (55.1) | – | |
| G | 10 (45.5) | 44 (44.9) |
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| GABRG2 C588T: | ||||
| CC | 2 (12.5) | 10 (26.3) | – | |
| CT | 3 (18.7) | 22 (57.9) |
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| TT | 11 (68.8) | 7 (18.4) |
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| C | 7 (21.9) | 42 (53.8) | – | |
| T | 25 (78.1) | 36 (46.2) |
| |
Statistically significant, OR – odds ratio, CI – confidence interval.
GABRG2 - Asn196Asn and GABRG2-G>A 3145 polymorphism in febrile seizures
|
| Febrile seizures | Total |
| Febrile seizures | Total | ||||
|---|---|---|---|---|---|---|---|---|---|
| Yes | No | Yes | No | ||||||
| GABRG2- Asn196Asn: | GABRG2 G>A 3145: | ||||||||
| CC |
| 3 (25.0) | 28 (58.3) | 31 (51.7) | AA |
| 5 (41.7) | 22 (45.8) | 27 (45.0) |
| CT |
| 5 (41.7) | 19 (39.6) | 24 (40.0) | AG |
| 2 (16.7) | 14 (29.2) | 16 (26.7) |
| TT |
| 4 (33.3) | 1 (2.1) | 5 (8.3) | GG |
| 5 (41.7) | 12 (25.0) | 17 (28.3) |
| Total |
| 12 (100.0) | 48 (100.0) | 60 (100.0) | Total |
| 12 (100.0) | 48 (100.0) | 60 (100.0) |
GABRG2 G>A 3145 and GABRG2 Asn 196 Asn polymorphism by gender
| Patient groups | Gender | Total | ||||
|---|---|---|---|---|---|---|
| Female | Male | |||||
| Cases (groups 1 and 2) | GABRG2 INTRON | AA |
| 8 (26.7) | 19 (63.3) | 27 (45.0) |
| AG |
| 9 (30.0) | 7 (23.3) | 16 (26.7) | ||
| GG |
| 13 (43.3) | 4 (13.3) | 17 (28.3) | ||
| Total |
| 30 (100.0) | 30 (100.0) | 60 (100.0) | ||
| Controls | GABRG2 INTRON | AA |
| 27 (30.0) | 11 (17.5) | 38 (24.8) |
| AG |
| 34 (37.8) | 44 (69.8) | 78 (51.0) | ||
| GG |
| 29 (32.2) | 8 (12.7) | 37 (24.2) | ||
| Total |
| 90 (100.0) | 63 (100.0) | 153 (100.0) | ||
| Cases (groups 1 and 2) | GABRG2 Asn 196 Asn | CC |
| 11 (36.7) | 20 (66.7) | 31 (51.7) |
| CT |
| 15 (50.0) | 9 (30.0) | 24 (40.0) | ||
| TT |
| 4 (13.3) | 1 (3.3) | 5 (8.3) | ||
| Total |
| 30 (100.0) | 30 (100.0) | 60 (100.0) | ||
| Controls | GABRG2 Asn 196 Asn | CC |
| 39 (43.3) | 40 (63.5) | 79 (51.6) |
| CT |
| 38 (42.2) | 19 (30.2) | 57 (37.3) | ||
| TT |
| 13 (14.4) | 4 (6.3) | 17 (11.1) | ||
| Total |
| 90 (100.0) | 63 (100.0) | 153 (100.0) | ||
Haplotypes in the control and epilepsy groups
| GABRG2 C588T-GABRG2 INTRON | Patient groups | χ2 test | |||
|---|---|---|---|---|---|
| Cases | Controls | ||||
| Haplotypes | CC-AA |
| 17 (28.3) | 23 (15.0) | Reference |
| CC-AG |
| 11 (18.3) | 43 (28.1) |
| |
| CC-GG |
| 3 (5.0) | 13 (8.5) |
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| CT-AA |
| 10 (16.7) | 8 (5.3) |
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| CT-AG |
| 5 (8.3) | 30 (19.6) |
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| CT-GG |
| 9 (15.0) | 19 (12.4) |
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| TT-AA |
| 0 | 7 (4.6) | – | |
| TT-AG |
| 0 | 5 (3.2) | – | |
| TT-GG |
| 5 (8.3) | 5 (3.2) |
| |
| Total | 60 (100.0) | 153 (100.0) | |||
Statistically significant, OR – odds ratio, CI – confidence interval.