Literature DB >> 29379216

Genome watch: Keeping tally in the microbiome.

Alexandre Almeida1, Yan Shao1.   

Abstract

This month's Genome Watch highlights how the development of new approaches for quantifying the human microbiome may pave the way for a better understanding of microbial shifts in the context of human health and disease.

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Mesh：

Year:  2018        PMID： 29379216     DOI： 10.1038/nrmicro.2018.13

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


  5 in total

1.  Absolute quantification of microbial taxon abundances.

Authors:  Ruben Props; Frederiek-Maarten Kerckhof; Peter Rubbens; Jo De Vrieze; Emma Hernandez Sanabria; Willem Waegeman; Pieter Monsieurs; Frederik Hammes; Nico Boon
Journal:  ISME J       Date:  2016-09-09       Impact factor: 10.302

2.  Quantitative microbiome profiling links gut community variation to microbial load.

Authors:  Doris Vandeputte; Gunter Kathagen; Kevin D'hoe; Sara Vieira-Silva; Mireia Valles-Colomer; João Sabino; Jun Wang; Raul Y Tito; Lindsey De Commer; Youssef Darzi; Séverine Vermeire; Gwen Falony; Jeroen Raes
Journal:  Nature       Date:  2017-11-15       Impact factor: 49.962

Review 3.  Shotgun metagenomics, from sampling to analysis.

Authors:  Christopher Quince; Alan W Walker; Jared T Simpson; Nicholas J Loman; Nicola Segata
Journal:  Nat Biotechnol       Date:  2017-09-12       Impact factor: 54.908

4.  Adjusting microbiome profiles for differences in microbial load by spike-in bacteria.

Authors:  Frank Stämmler; Joachim Gläsner; Andreas Hiergeist; Ernst Holler; Daniela Weber; Peter J Oefner; André Gessner; Rainer Spang
Journal:  Microbiome       Date:  2016-06-21       Impact factor: 14.650

Review 5.  Microbiome Datasets Are Compositional: And This Is Not Optional.

Authors:  Gregory B Gloor; Jean M Macklaim; Vera Pawlowsky-Glahn; Juan J Egozcue
Journal:  Front Microbiol       Date:  2017-11-15       Impact factor: 5.640
  5 in total
  3 in total

1.  Accurate 16S Absolute Quantification Sequencing Revealed Vaginal Microecological Composition and Dynamics During Mixed Vaginitis Treatment With Fufang FuRong Effervescent Suppository.

Authors:  Meng Li; Zhen Zeng; Huijun Feng; Yang Cao; Qiongqiong Zhang; Tao Lv; Xingsheng Yang; Dianrong Song; Ping Li; Lina Hu; Shangrong Fan; Ruifang An; Bei Zhang; Lei Zhang; Qinping Liao
Journal:  Front Cell Infect Microbiol       Date:  2022-05-13       Impact factor: 6.073

2.  Antibacterial efficacy of cold atmospheric plasma against Enterococcus faecalis planktonic cultures and biofilms in vitro.

Authors:  Felix Theinkom; Larissa Singer; Fabian Cieplik; Sylvia Cantzler; Hannes Weilemann; Maximilian Cantzler; Karl-Anton Hiller; Tim Maisch; Julia L Zimmermann
Journal:  PLoS One       Date:  2019-11-26       Impact factor: 3.240

3.  Gradient Internal Standard Method for Absolute Quantification of Microbial Amplicon Sequencing Data.

Authors:  Shilei Wang; Qun Wu; Ying Han; Rubing Du; Xiaoyong Wang; Yao Nie; Xiaowei Du; Yan Xu
Journal:  mSystems       Date:  2021-01-12       Impact factor: 6.496
  3 in total

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