Literature DB >> 29373939

Fish DNA barcoding around large marine infrastructure for improved biodiversity assessment and monitoring.

Ulises Rosas1,2, Francisco Menendez1, Rodolfo Cornejo3,4, Remy Canales2, Ximena Velez-Zuazo1.   

Abstract

Accurate species-level identification is pivotal for environmental assessments and monitoring. The PERU LNG terminal is composed of large marine infrastructure located on the central coast of Peru. Since construction, taxonomically challenging species such as drum fishes (Sciaenidae) have been attracted to the new hard-bottom habitat. We conducted a DNA barcoding study to investigate fish diversity and constructed a DNA barcode reference library. We examined 56 vouchered specimens and identified 24 unique species. Intra- and interspecific divergence estimates ranged between 0 and 0.64% and 11 and 35.5%, respectively. We assessed the efficiency of the reference library to identify 29 non-vouchered specimens. We had 82.5% efficiency by using both our reference library (n = 17) and GenBank (n = 24). We highlight the importance of implementing molecular barcoding for complementing biodiversity assessments in marine environments. This study represents a first step towards generating a comprehensive DNA barcode reference library for marine fishes in Peru.

Entities:  

Keywords:  COI; DNA barcode reference library; Humboldt current ecosystem; Sciaenidae; species identification

Mesh:

Year:  2018        PMID: 29373939     DOI: 10.1080/24701394.2018.1431225

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  1 in total

1.  Macrobenthic fauna from an upwelling coastal area of Peru (Warm Temperate South-eastern Pacific province -Humboldtian ecoregion).

Authors:  Vicente Tasso; Mustapha El Haddad; Carolina Assadi; Remy Canales; Luis Aguirre; Ximena Vélez-Zuazo
Journal:  Biodivers Data J       Date:  2018-09-10
  1 in total

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