Literature DB >> 29371844

Teaching with Big Data: Report from the 2016 Society for Neuroscience Teaching Workshop.

William Grisham1, Joshua C Brumberg2, Terri Gilbert3, Linda Lanyon4, Robert W Williams5, Richard Olivo6.   

Abstract

As part of a series of workshops on teaching neuroscience at the Society for Neuroscience annual meetings, William Grisham and Richard Olivo organized the 2016 workshop on "Teaching Neuroscience with Big Data." This article presents a summary of that workshop. Speakers provided overviews of open datasets that could be used in teaching undergraduate courses. These included resources that already appear in educational settings, including the Allen Brain Atlas (presented by Joshua Brumberg and Terri Gilbert), and the Mouse Brain Library and GeneNetwork (presented by Robert Williams). Other resources, such as NeuroData (presented by William R. Gray Roncal), and OpenFMRI, NeuroVault, and Neurosynth (presented by Russell Poldrack) have not been broadly utilized by the neuroscience education community but offer obvious potential. Finally, William Grisham discussed the iNeuro Project, an NSF-sponsored effort to develop the necessary curriculum for preparing students to handle Big Data. Linda Lanyon further elaborated on the current state and challenges in educating students to deal with Big Data and described some training resources provided by the International Neuroinformatics Coordinating Facility. Neuroinformatics is a subfield of neuroscience that deals with data utilizing analytical tools and computational models. The feasibility of offering neuroinformatics programs at primarily undergraduate institutions was also discussed.

Entities:  

Keywords:  Allen Brain Atlas; Big Data; GeneNetwork NeuroData; INCF; Mouse Brain Library; NeuroVault; Neurosynth; OpenfMRI; educational resources; iNeuro; neuroinformatics

Year:  2017        PMID: 29371844      PMCID: PMC5777841     

Source DB:  PubMed          Journal:  J Undergrad Neurosci Educ        ISSN: 1544-2896


  18 in total

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Authors:  Ed S Lein; Michael J Hawrylycz; Nancy Ao; Mikael Ayres; Amy Bensinger; Amy Bernard; Andrew F Boe; Mark S Boguski; Kevin S Brockway; Emi J Byrnes; Lin Chen; Li Chen; Tsuey-Ming Chen; Mei Chi Chin; Jimmy Chong; Brian E Crook; Aneta Czaplinska; Chinh N Dang; Suvro Datta; Nick R Dee; Aimee L Desaki; Tsega Desta; Ellen Diep; Tim A Dolbeare; Matthew J Donelan; Hong-Wei Dong; Jennifer G Dougherty; Ben J Duncan; Amanda J Ebbert; Gregor Eichele; Lili K Estin; Casey Faber; Benjamin A Facer; Rick Fields; Shanna R Fischer; Tim P Fliss; Cliff Frensley; Sabrina N Gates; Katie J Glattfelder; Kevin R Halverson; Matthew R Hart; John G Hohmann; Maureen P Howell; Darren P Jeung; Rebecca A Johnson; Patrick T Karr; Reena Kawal; Jolene M Kidney; Rachel H Knapik; Chihchau L Kuan; James H Lake; Annabel R Laramee; Kirk D Larsen; Christopher Lau; Tracy A Lemon; Agnes J Liang; Ying Liu; Lon T Luong; Jesse Michaels; Judith J Morgan; Rebecca J Morgan; Marty T Mortrud; Nerick F Mosqueda; Lydia L Ng; Randy Ng; Geralyn J Orta; Caroline C Overly; Tu H Pak; Sheana E Parry; Sayan D Pathak; Owen C Pearson; Ralph B Puchalski; Zackery L Riley; Hannah R Rockett; Stephen A Rowland; Joshua J Royall; Marcos J Ruiz; Nadia R Sarno; Katherine Schaffnit; Nadiya V Shapovalova; Taz Sivisay; Clifford R Slaughterbeck; Simon C Smith; Kimberly A Smith; Bryan I Smith; Andy J Sodt; Nick N Stewart; Kenda-Ruth Stumpf; Susan M Sunkin; Madhavi Sutram; Angelene Tam; Carey D Teemer; Christina Thaller; Carol L Thompson; Lee R Varnam; Axel Visel; Ray M Whitlock; Paul E Wohnoutka; Crissa K Wolkey; Victoria Y Wong; Matthew Wood; Murat B Yaylaoglu; Rob C Young; Brian L Youngstrom; Xu Feng Yuan; Bin Zhang; Theresa A Zwingman; Allan R Jones
Journal:  Nature       Date:  2006-12-06       Impact factor: 49.962

2.  Enabling an Open Data Ecosystem for the Neurosciences.

Authors:  Martin Wiener; Friedrich T Sommer; Zachary G Ives; Russell A Poldrack; Brian Litt
Journal:  Neuron       Date:  2016-11-02       Impact factor: 17.173

3.  Opinion: Big data biomedicine offers big higher education opportunities.

Authors:  John Darrell Van Horn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-07       Impact factor: 11.205

4.  Undergraduate Biocuration: Developing Tomorrow's Researchers While Mining Today's Data.

Authors:  Cassie S Mitchell; Ashlyn Cates; Renaid B Kim; Sabrina K Hollinger
Journal:  J Undergrad Neurosci Educ       Date:  2015-10-15

5.  Inferring mental states from neuroimaging data: from reverse inference to large-scale decoding.

Authors:  Russell A Poldrack
Journal:  Neuron       Date:  2011-12-08       Impact factor: 17.173

6.  GeneNetwork: A Toolbox for Systems Genetics.

Authors:  Megan K Mulligan; Khyobeni Mozhui; Pjotr Prins; Robert W Williams
Journal:  Methods Mol Biol       Date:  2017

Review 7.  Independent component analysis of functional MRI: what is signal and what is noise?

Authors:  Martin J McKeown; Lars Kai Hansen; Terrence J Sejnowsk
Journal:  Curr Opin Neurobiol       Date:  2003-10       Impact factor: 6.627

8.  Collaborative mining of public data resources in neuroinformatics.

Authors:  Rupert W Overall; Robert W Williams; J Alexander Heimel
Journal:  Front Neurosci       Date:  2015-03-18       Impact factor: 4.677

9.  Teaching neuroinformatics with an emphasis on quantitative locus analysis.

Authors:  William Grisham; Christopher A Korey; Natalie A Schottler; Lisa Beck McCauley; Jackson Beatty
Journal:  J Undergrad Neurosci Educ       Date:  2012-10-15

10.  Novel in silico Method for Teaching Cytoarchitecture, Cellular Diversity, and Gene Expression in the Mammalian Brain.

Authors:  Raddy L Ramos; Phoebe T Smith; Joshua C Brumberg
Journal:  J Undergrad Neurosci Educ       Date:  2007-10-15
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  3 in total

1.  Highlights from the Era of Open Source Web-Based Tools.

Authors:  Kristin R Anderson; Julie A Harris; Lydia Ng; Pjotr Prins; Sara Memar; Bengt Ljungquist; Daniel Fürth; Robert W Williams; Giorgio A Ascoli; Dani Dumitriu
Journal:  J Neurosci       Date:  2021-01-20       Impact factor: 6.167

2.  The Allen Brain Atlas as a Resource for Teaching Undergraduate Neuroscience.

Authors:  Terri L Gilbert
Journal:  J Undergrad Neurosci Educ       Date:  2018-09-15

3.  Pandemic Teaching: Using the Allen Cell Types Database for Final Semester Projects in an Undergraduate Neurophysiology Lab Course.

Authors:  Yi-Yun Ho; Andrea Roeser; Gwenda Law; Bruce R Johnson
Journal:  J Undergrad Neurosci Educ       Date:  2021-12-24
  3 in total

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