| Literature DB >> 29367595 |
Bohang Zhou1, Bingyu Zhang1, Xingqiang Li1, Xiuxiu Liu1, Hui Li1, Ding Li1, Zhiming Cui1, Huiling Geng2, Le Zhou3.
Abstract
A series of 2-aryl-9-methyl-β-carbolinium bromides (B) were synthesized and explored for anti-acetylcholinesterase (AChE) activities in vitro, action mechanism and structure-activity relationship. All the compounds B along with their respective 3,4-dihydro intermediates (A) presented anti-AChE activity at 10 μM. Thirteen compounds B showed the excellent activity with IC50 values of 0.11-0.76 μM and high selectivity toward AChE relative to butyrylcholinesterase (BChE), superior to galantamine (IC50 = 0.79 μM), a selective AChE inhibitor drug. Kinetic analysis showed that the action mechanisms of both compounds B and A are a competitive inhibition model. Structure-activity relationship analyses showed that the C = N+ moiety is a determinant for the activity. Substituents at 6, 7 or 4' site, the indole-N-alkyl and the aromatization of the C-ring can significantly improve the activity. Molecular docking studies showed that the compounds could combine with the active site of AChE by the π-π or cation-π action between the carboline ring and the phenyl rings of the residues, and the β-carboline moiety is embedded in a cavity surrounded by four aromatic residues of Trp86, Tyr337, Trp439 and Tyr449. The present results strongly suggest that the para-position of the D-ring should be a preferred modification site for further structural optimization design. Thus, 2-aryl-9-methyl-β-carboliniums emerged as novel and promising tool compounds for the development of new AChE inhibitor agents.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29367595 PMCID: PMC5784158 DOI: 10.1038/s41598-018-19999-3
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Synthetic route of target compounds B1-B34 and C1. Reagents and conditions: (a) phenylhydrazine-HCl, H2O, 12 h at r.t.; (b) EtOH, con. H2SO4, reflux for 12 h; (c) R2I or R2Br, NaH, dry DMF, 0 °C; (d) LiAlH4, dry THF, 0 °C to r.t.; (e) active MnO2, CHCl3, r.t.; (f) MsCl, Et3N, LiBr, dry THF, 0 °C to r.t.; (g) R-PhNH2, TsOH·H2O, EtOH, r.t.; (h) Pd/C, acetonitrile, reflux; (i) NaBH4, EtOH, r.t.
Structures and inhibitory activity of compounds A and intermediates B against AChE. The test concentration of the compound is 10 μM. The differences between data with the different lowercases within a column are significant (p < 0.05).
| Compound | Inhibition rate (%) | Compound | Inhibition rate (%) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| No. | R1 | R2 | R3 | No. | R1 | R2 | R3 | ||
|
| H | Me | H | 71.5 ± 0.3 l |
| H | Me | H | |
|
| H | Me | 2′-F | 59.8 ± 3.2 n |
| H | Me | 2′-F | 15.1 ± 2.8 mnop |
|
| H | Me | 3′-F | 70.5 ± 2.2 l |
| H | Me | 3′-F | 22.4 ± 1.1 l |
|
| H | Me | 4′-F | 84.3 ± 1.5 hi |
| H | Me | 4′-F | |
|
| H | Me | 2′-Cl | 38.5 ± 1.9 st |
| H | Me | 2′-Cl | 2.4 ± 8.0 stu |
|
| H | Me | 3′-Cl | 56.4 ± 2.5 no |
| H | Me | 3′-Cl | 19.3 ± 4.0 lm |
|
| H | Me | 4′-Cl | 91.2 ± 1.5 cde |
| H | Me | 4′-Cl | |
|
| H | Me | 2′-Br | 32.1 ± 0.9 u |
| H | Me | 2′-Br | 5.9 ± 1.0 qrs |
|
| H | Me | 3′-Br | 48.8 ± 6.6 q |
| H | Me | 3′-Br | 16.2 ± 3.3 mno |
|
| H | Me | 4′-Br | 95.4 ± 0.8 ab |
| H | Me | 4′-Br | |
|
| H | Me | 2′-I | 43.3 ± 1.8 r |
| H | Me | 2′-I | −10.6 ± 3.0 w |
|
| H | Me | 3′-I | 56.4 ± 5.9 no |
| H | Me | 3′-I | 10.1 ± 2.8 pqr |
|
| H | Me | 4′-I | 93.8 ± 0.4 abcd |
| H | Me | 4′-I | |
|
| H | Me | 2′-OH | 23.9 ± 4.3 v |
| H | Me | 2′-OH | 23.2 ± 2.5 kl |
|
| H | Me | 3′-OH | 72.1 ± 1.8 l |
| H | Me | 3′-OH | |
|
| H | Me | 4′-OH | 82.1 ± 2.5 ij |
| H | Me | 4′-OH | |
|
| H | Me | 2′-OMe | 41.0 ± 2.9 rs |
| H | Me | 2′-OMe | 5.8 ± 2.4 qrs |
|
| H | Me | 3′-OMe | 53.5 ± 0.4 op |
| H | Me | 3′-OMe | 4.7 ± 1.5 rst |
|
| H | Me | 4′-OMe | 90.7 ± 0.8 def |
| H | Me | 4′-OMe | 66.1 ± 0.5 c |
|
| H | Me | 2′-Me | 59.6 ± 3.2 n |
| H | Me | 2′-Me | 44.3 ± 1.7 j |
|
| H | Me | 3′-Me | 72.4 ± 3.9 l |
| H | Me | 3′-Me | 28.6 ± 1.7 k |
|
| H | Me | 4′-Me | 95.2 ± 0.5 abc |
| H | Me | 4′-Me | |
|
| H | Me | 2′-CN | 68.7 ± 0.7 lm |
| H | Me | 2′-CN | 10.1 ± 1.6 pqr |
|
| H | Me | 3′-CN | 50.7 ± 2.2 pq |
| H | Me | 3′-CN | 18.9 ± 0.3 lmn |
|
| H | Me | 4′-CN | 36.8 ± 0.8 t |
| H | Me | 4′-CN | 15.6 ± 1.8 mnop |
|
| H | Me | 3′-CF3 | 41.0 ± 1.9 rs |
| H | Me | 3′-CF3 | 12.8 ± 2.1 kln |
|
| H | Me | 4′-CF3 | 91.4 ± 0.3 bcde |
| H | Me | 4′-CF3 | 28.4 ± 1.0 k |
|
| H | Me | 3′-NO2 | 34.9 ± 1.8 tu |
| H | Me | 3′-NO2 | 14.5 ± 3.9 mnop |
|
| H | Me | 2′,6′-diF | 48.5 ± 3.1 pq |
| H | Me | 2′,6′-diF | −3.3 ± 2.0 uv |
|
| H | Me | 2′,4′-diCl | 90.6 ± 1.0 def |
| H | Me | 2′,4′-diCl | −0.5 ± 2.4 tu |
|
| H | Me | 3′,5′-diCl | 18.9 ± 2.5 v |
| H | Me | 3′,5′-diCl | 0.7 ± 0.5 stu |
|
| H | Me | 2′-F-4′-Br | 92.8 ± 1.0 abc |
| H | Me | 2′-F-4′-Br | 11.1 ± 2.8 opq |
|
| H | Me | 2′,4′-diBr | 96.7 ± 0.05 a |
| H | Me | 2′,4′-diBr | −7.0 ± 8.3 vw |
|
| 6-OMe | Me | H | 85.7 ± 2.5 ghi |
| 6-OMe | Me | H | 68.4 ± 2.8 c |
|
| 6-Me | Me | H | 88.6 ± 2.5 efg |
| 6-Me | Me | H | 70.3 ± 2.2 bc |
|
| 7-F | Me | H | 76.2 ± 1.1 k |
| 7-F | Me | H | 59.3 ± 2.1 de |
|
| 7-Cl | Me | H | 89.9 ± 0.7 def |
| 7-Cl | Me | H | 66.6 ± 4.7 c |
|
| H | Et | H | 87.8 ± 1.1 efgh |
| H | Et | H | 76.6 ± 3.7 a |
|
| H | Pr | H | 78.8 ± 0.9 jk |
| H | Pr | H | 67.1 ± 2.4 c |
|
| H | iPr | H | 86.9 ± 0.8 fgh |
| H | iPr | H | 68.9 ± 5.1 bc |
|
| H | allyl | H | 78.2 ± 1.6 k |
| H | allyl | H | 74.4 ± 1.1 ab |
|
| H | Bu | H | 65.7 ± 0.6 m |
| H | Bu | H | 53.9 ± 1.5 ef |
|
| H | iBu | H | 84.1 ± 0.6 hi |
| H | iBu | H | 46.5 ± 1.9 ghi |
|
| H | Bn | H | 47.8 ± 2.0 q |
| H | Bn | H | 31.2 ± 4.4 ef |
|
| H | CH2CO2Et | H | 42.0 ± 0.7 rs |
| H | CH2CO2Et | H | 38.8 ± 4.6 j |
|
| H | H | H | 43.0 ± 1.8 r |
| H | H | H | 41.3 ± 1.4 ij |
|
| H | Me | 4′-Me | −2.3 ± 3.2 w |
| H | H | 4′-Br | 16.0 ± 1.7 mnop |
| Galantamine | 91.2 ± 1.1 cde | ||||||||
Median inhibition concentrations of part of compounds B and intermediates A against AChE and BuChE. SI: selectivity index, the ratio value of IC50 (BuChE)/IC50 (AChE); Estimated values based on the results in Table 1; ND: no determination. NA: no inhibition activity at 10 μM; The data are cited from ref.[44]; The data are cited from ref.[45]. The data are cited from ref.[46].
| Compound | IC50 ± S.D (μM) | SI | Compound | IC50 ± S.D (μM) | SI | ||
|---|---|---|---|---|---|---|---|
| AChE | BuChE | AChE | BuChE | ||||
|
| 3.18 ± 0.12 | 124.9 ± 7.8 | 39.3 |
| 18.6 ± 2.93 | 10.1 ± 1.66 | 0.54 |
|
| 6.65 ± 1.07 | 23.0 ± 0.53 | 3.49 |
| >10 | ND | |
|
| 4.73 ± 0.33 | 72.4 ± 4.25 | 15.3 |
| >10 | ND | |
|
| 1.46 ± 0.12 | 51.6 ± 2.43 | 35.3 |
| 14.1 ± 1.41 | 59.5 ± 2.72 | 4.22 |
|
| >10 | ND |
| ≫10 | ND | ||
|
| 9.65 ± 0.78 | 33.1 ± 1.07 | 3.40 |
| >10 | ND | |
|
| 60.0 ± 1.52 | 107.1 |
| 7.58 ± 1.29 | 42.2 ± 0.86 | 5.57 | |
|
| >10 | ND |
| ≫10 | ND | ||
|
| ≈10 | ND |
| >10 | ND | ||
|
| 55.4 ± 1.73 | 128.8 |
| 6.79 ± 2.29 | 76.2 ± 11.0 | 11.2 | |
|
| >10 | ND |
| NA | ND | ||
|
| 11.1 ± 1.34 | 21.1 ± 0.46 | 1.90 |
| >10 | ND | |
|
| 40.4 ± 1.83 | 168.3 |
| 5.50 ± 0.37 | 53.8 ± 2.51 | 9.80 | |
|
| >10 | ND |
| >10 | ND | ||
|
| 3.92 ± 0.30 | 29.6 ± 2.48 | 7.60 |
| 6.12 ± 0.61 | 10.0 ± 0.59 | 1.63 |
|
| 1.50 ± 0.19 | 67.9 ± 11.5 | 45.3 |
| 2.81 ± 0.22 | 28.0 ± 2.88 | 9.96 |
|
| >10 | ND |
| ≫10 | ND | ||
|
| 9.69 ± 0.80 | 62.2 ± 3.62 | 6.42 |
| ≫10 | ND | |
|
| 34.0 ± 2.00 | 72.3 |
| 2.92 ± 0.28 | 137.0 ± 0.79 | 46.9 | |
|
| 9.71 ± 0.55 | 154.0 ± 9.1 | 15.9 |
| >10 | ND | |
|
| 5.05 ± 0.26 | 68.6 ± 8.06 | 13.6 |
| >10 | ND | |
|
| 32.2 ± 1.65 | 111.6 |
| 1.45 ± 0.21 | 80.1 ± 5.27 | 55.2 | |
|
| 4.41 ± 0.29 | 195.6 ± 13.4 | 44.4 |
| >10 | ND | |
|
| 10.3 ± 0.60 | 212.2 ± 17.4 | 20.6 |
| >10 | ND | |
|
| >10 | ND |
| >10 | ND | ||
|
| >10 | ND |
| >10 | ND | ||
|
| 77.9 ± 4.97 | 111.3 |
| >10 | ND | ||
|
| >10 | ND |
| >10 | ND | ||
|
| ≈10 | ND |
| NA | ND | ||
|
| 132.6 ± 26.3 | 241.1 |
| NA | ND | ||
|
| >10 | ND |
| NA | ND | ||
|
| 115.5 ± 18.2 | 385.0 |
| >10 | ND | ||
|
| 30.6 ± 2.31 | 278.2 |
| NA | ND | ||
|
| 0.94 ± 0.23 | 33.3 ± 2.34 | 35.4 |
| 2.04 ± 0.33 | 37.6 ± 2.84 | 18.4 |
|
| 17.2 ± 1.86 | 41.0 |
| 2.66 ± 0.37 | 10.6 ± 0.58 | 3.98 | |
|
| 2.61 ± 0.51 | 27.0 ± 1.14 | 10.3 |
| 4.74 ± 0.90 | 14.2 ± 0.44 | 3.00 |
|
| 14.4 ± 0.84 | 25.3 |
| 4.02 ± 0.95 | 11.7 ± 0.50 | 2.91 | |
|
| 17.1 ± 0.78 | 22.5 |
| 3.69 ± 0.40 | 10.4 ± 0.40 | 2.82 | |
|
| 3.08 ± 0.66 | 37.0 ± 5.40 | 12.0 |
| 5.72 ± 0.66 | 13.0 ± 0.62 | 2.27 |
|
| 16.5 ± 2.37 | 30.6 |
| 3.73 ± 0.34 | 16.3 ± 0.56 | 4.37 | |
|
| 1.18 ± 0.30 | 16.2 ± 1.80 | 13.7 |
| 3.91 ± 0.36 | 6.83 ± 0.20 | 1.75 |
|
| 2.91 ± 0.33 | 22.8 ± 3.18 | 7.84 |
| 9.79 ± 3.55 | 10.0 ± 0.68 | 1.02 |
|
| 0.98 ± 0.03 | 6.53 ± 0.61 | 6.66 |
| >10 | ND | |
|
| 11.2 ± 2.54 | 24.1 ± 2.23 | 2.15 |
| >10 | ND | |
|
| >10 | ND |
| >10 | ND | ||
|
| 18.0 ± 2.42 | 18.7 ± 2.80 | 1.04 |
| 18.2 ± 1.97 | 3.90 ± 0.53 | 0.21 |
|
| NA | ND |
| >10 | ND | ||
| Galantamine | 0.79 ± 0.05 | 13.7 ± 0.71 | 18.0 | Tacrine | 0.25 ± 0.01 | 0.05 ± 0.00 | 0.22 |
| Rivastigmine | 9.94 ± 0.83 | 2.86 ± 0.22 | 0.29 | Donepezil | 0.03 ± 0.01 | 5.40 ± 0.27 | 180 |
Cytotoxicity of the compounds on mouse neuroblastoma N2a cells and primary cultured porcine fetal kidney cells (48 h). 95% CI: the confidence interval of IC50 at 95% probability.
| Compound | Mouse neuroblastoma N2a cells | Primary cultured porcine fetal kidney cells | ||
|---|---|---|---|---|
| IC50 (μM) | 95% CI (μM) | IC50 (μM) | 95% CI (μM) | |
|
| 10.6 | 8.26–14.4 | >20 | |
|
| 19.2 | 13.0–33.2 | 18.1 | 13.5–27.2 |
|
| 2.13 | 1.88–2.41 | 5.18 | 4.72–5.68 |
Figure 2The Mechanism of AChE inhibition by compound B22 (A) and intermediate A22 (C) respective to ATCh, and their Ki determination (B,D). (A and B) The reciprocals of the initial reaction rates and substrate concentrations are plotted. (C and D) The slope values of the lines from graph A or C are plotted versus the inhibitor concentration, affording an equation of linear regression. When y is 0, the equations give Ki values of 4.25 × 10−8 M for compound B22 and 4.83 × 10−7 M for compound A22.
Effect of substitution patterns of the D-ring on the activity of compounds B and A. Arrows outside of parentheses represent compounds B; arrows inside parentheses represent compounds A. ↑significantly increasing the activity relative to R = H; ↓significantly decreasing the activity; ±, slight change of the activity. “nd” means no determination.
| Substituent (R) | Anti-AChE | Selectivity toward AChE | Anti-BChE | ||||||
|---|---|---|---|---|---|---|---|---|---|
| 2′-R | 3′-R | 4′-R | 2′-R | 3′-R | 4′-R | 2′-R | 3′-R | 4′-R | |
| F | ↓ (↓) | ± (↓) | ↑ (↑) | ↓ (nd) | ↓ (nd) | ↓ (↑) | ↑ (nd) | ↑ (nd) | ↑ (↓) |
| Cl | ↓ (↓) | ↓ (↓) | ↑ (↑) | nd | ↓ (nd) | ↑ (↑) | nd | ↑ (nd) | ↑ (↓) |
| Br | ↓ (↓) | ↓ (↓) | ↑ (↑) | nd | nd | ↑ (↑) | nd | nd | ↑ (↓) |
| I | ↓ (↓) | ↓ (↓) | ↑ (↑) | nd | ↓ (nd) | ↑ (↑) | nd | ↑ (nd) | ↑ (↓) |
| OH | ↓ (↓) | ± (↑) | ↑ (↑) | nd | ↓ (↑) | ↑ (↑) | nd | ↑ (±) | ↑ (↓) |
| OMe | ↓ (↓) | ↓ (↓) | ↑ (↑) | nd | ↓ (nd) | ↑ (↑) | nd | ↑ (nd) | ↑ (↓) |
| Me | ↓ (±) | ± (↓) | ↑ (↑) | ↓(nd) | ↓ (nd) | ↑ (↑) | ↓ (nd) | ↑ (nd) | ↑ (↓) |
| CN | ± (↓) | ↓ (↓) | ↓ (↓) | ↑ (nd) | ↓ (nd) | nd | ↓ (nd) | ↓ (nd) | nd |
| CF3 | nd | ↓ (↓) | ↑ (↓) | Nd | nd | ↑(nd) | nd | nd | ↑ (nd) |
| NO2 | nd | ↓ (↓) | nd | Nd | nd | nd | nd | nd | nd |
Effect of substitution patterns of the D-ring on the activity of compounds B and A. ↑significantly increasing the activity relative to R = H; ↓significantly decreasing the activity; ±, slight change of the activity. “nd” means no determination.
| Dihalogenation | Anti-AChE | Selectivity toward AChE | Anti-BChE | |||
|---|---|---|---|---|---|---|
| Compound B | Compound A | Compound B | Compound A | Compound B | Compound A | |
| 2′,4′-diCl | ↑ | ↓ | ↑ | nd | ↓ | nd |
| 2′,4′-diBr | ↑ | ↓ | ↑ | nd | ↑ | nd |
| 2′-F-4′-Br | ↑ | ↓ | ↑ | nd | ↑ | nd |
| 2′,6′-diF | ↓ | ↓ | nd | nd | nd | nd |
| 3′,5′-diCl | ↓ | ↓ | nd | nd | nd | nd |
Effect of the indole-N-alkyl and substitution patterns of the A-ring on the activity of compounds B and A. ↑, significantly increasing the activity relative to R = H; ↓, significantly decreasing the activity; ±, slight change of the activity. “nd” means no determination.
| Substituent | Anti-AChE | Selectivity toward AChE | Anti-BChE | |||
|---|---|---|---|---|---|---|
| Compound B | Compound A | Compound B | Compound A | Compound B | Compound A | |
| 6-OMe | ↑ | ↓ | ↓ | ↑ | ↑ | ↓ |
| 6-Me | ↑ | ↓ | ± | ↑ | ↑ | ± |
| 7-F | ↑ | ↓ | ↓ | ↑ | ↑ | ↓ |
| 7-Cl | ↑ | ↓ | ↓ | ↑ | ↑ | ± |
| (N)Me | ↑ | ± | ↑ | ↑ | ↓ | ↓ |
| (N)Et | ↑ | ↑ | ↑ | ↑ | ± | ↓ |
| (N)Pr | ↑ | ↑ | ↑ | ↑ | ↓ | ↓ |
| (N)iPr | ↑ | ↑ | ↑ | ↑ | ± | ↓ |
| (N)Allyl | ↑ | ↑ | ↑ | ↑ | ± | ↓ |
| (N)Bu | ↑ | ↑ | ↑ | ↑ | ↓ | ↓ |
| (N)iBu | ↑ | ± | ↑ | nd | ↑ | nd |
| (N)Bn | ↑ | ↓ | ↑ | nd | ↓ | nd |
| (N)CH2CO2Et | ± | ↓ | nd | nd | nd | |
Figure 3The estimated binding modes of the compounds into the active site of AChE and BuChE. The protein structures are show in Ribbon style with coil in green, helix in red and strand in yellow. The binding site residues are displayed using a stick model with carbon in green. The potential hydrogen contacts between compounds and protein were highlighted by yellow dashed lines. (A) Superposition of huprine W in the X-ray crystallographic structure (PDB code 4BDT; orange) and in docking resultant complex structure of the AChE (dark green). (B–E) The binding modes of the compounds (in stick model with carbon) into the active site of AChE: (B) B22 (cyan) and A22 (pink); (C) B22 (cyan) and B21 (goldenrod); (D) B19 (chartreuse) and B18 (medium blue); (E) B16 (purple) and B15 (orange red). (F) The binding modes of compounds B22 (cyan) and A22 (pink) into the active site of BuChE. Other atoms were colored as follows: nitrogen, blue; oxygen, red; hydrogen, gray.
The binding free energies of compounds with AChE and BuChE. The inhibitor co-crystals with AChE in the crystal structure of the protein complex (PDB code: 4BDT). The inhibitor co-crystals with BuChE in the crystal structure of the protein complex (PDB code: 5K5E).
| Compound | IC50 (μM) | FBE (kcal/mol) | ||
|---|---|---|---|---|
| AChE | BuChE | AChE | BuChE | |
|
| 5.5 | 53.8 | −10.38 | −7.51 |
|
| 6.12 | 10 | −9.38 | −7.7 |
|
| 2.81 | 28 | −9.48 | −7.69 |
|
| 2.92 | 137 | −10.04 | −7.25 |
|
| 1.45 | 80.1 | −9.46 | −7.52 |
|
| 11.1 | 21.1 | −9.78 | −8.26 |
|
| 0.24 | 40.4 | −10.46 | −7.46 |
|
| 3.92 | 29.6 | −9.57 | −7.8 |
|
| 1.5 | 67.9 | −9.43 | −7.76 |
|
| 9.69 | 62.2 | −9.46 | −7.65 |
|
| 0.47 | 34 | −10.11 | −7.65 |
|
| 5.05 | 68.6 | −9.37 | −7.82 |
|
| 0.29 | 32.2 | −9.86 | −7.38 |
|
| 0.11 | 30.6 | −10.28 | −7.97 |
|
| 0.0011 | −10.23 | / | |
|
| 0.443 | / | −11.49 | |
Figure 4Possible existing forms of N9-H-type compounds in an aqueous solution.
Figure 5Plausible existing forms of compounds A or B in an aqueous solution.