Literature DB >> 29364747

Rare and Common Variants Conferring Risk of Tooth Agenesis.

L Jonsson1,2, T E Magnusson3, A Thordarson3, T Jonsson3, F Geller4, B Feenstra4, M Melbye4,5,6, E A Nohr7, S Vucic8,9, B Dhamo8,9, F Rivadeneira9,10,11, E M Ongkosuwito8,9, E B Wolvius8,9, E J Leslie12,13, M L Marazita12,14,15, B J Howe16, L M Moreno Uribe16, I Alonso17,18, M Santos17,18, T Pinho17,18,19, R Jonsson20, G Audolfsson21, L Gudmundsson1, M S Nawaz1,22, S Olafsson1, O Gustafsson1, A Ingason1, U Unnsteinsdottir1, G Bjornsdottir1, G B Walters1,22, M Zervas1, A Oddsson1, D F Gudbjartsson1, S Steinberg1, H Stefansson1, K Stefansson1,22.   

Abstract

We present association results from a large genome-wide association study of tooth agenesis (TA) as well as selective TA, including 1,944 subjects with congenitally missing teeth, excluding third molars, and 338,554 controls, all of European ancestry. We also tested the association of previously identified risk variants, for timing of tooth eruption and orofacial clefts, with TA. We report associations between TA and 9 novel risk variants. Five of these variants associate with selective TA, including a variant conferring risk of orofacial clefts. These results contribute to a deeper understanding of the genetic architecture of tooth development and disease. The few variants previously associated with TA were uncovered through candidate gene studies guided by mouse knockouts. Knowing the etiology and clinical features of TA is important for planning oral rehabilitation that often involves an interdisciplinary approach.

Entities:  

Keywords:  genetics; hypodontia; molecular genetics; odontogenesis; oligodontia; orofacial cleft(s)

Mesh:

Year:  2018        PMID: 29364747      PMCID: PMC5958369          DOI: 10.1177/0022034517750109

Source DB:  PubMed          Journal:  J Dent Res        ISSN: 0022-0345            Impact factor:   8.924


  40 in total

1.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Authors:  Brendan K Bulik-Sullivan; Po-Ru Loh; Hilary K Finucane; Stephan Ripke; Jian Yang; Nick Patterson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-02-02       Impact factor: 38.330

2.  A genome-wide association study of third molar agenesis in Japanese and Korean populations.

Authors:  Shugo Haga; Hirofumi Nakaoka; Tetsutaro Yamaguchi; Ken Yamamoto; Yong-Il Kim; Hiroshi Samoto; Toshihide Ohno; Koshu Katayama; Hajime Ishida; Soo-Byung Park; Ryosuke Kimura; Koutaro Maki; Ituro Inoue
Journal:  J Hum Genet       Date:  2013-10-31       Impact factor: 3.172

Review 3.  Molecular patterning of the mammalian dentition.

Authors:  Yu Lan; Shihai Jia; Rulang Jiang
Journal:  Semin Cell Dev Biol       Date:  2013-12-16       Impact factor: 7.727

4.  Initiation of teeth from the dental lamina in the ferret.

Authors:  Maria Jussila; Xenia Crespo Yanez; Irma Thesleff
Journal:  Differentiation       Date:  2014-01-06       Impact factor: 3.880

5.  Prevalence of malocclusion in 6-year-old Icelandic children.

Authors:  B Johannsdottir; P J Wisth; T E Magnusson
Journal:  Acta Odontol Scand       Date:  1997-12       Impact factor: 2.331

Review 6.  Morphologic and Demographic Predictors of Third Molar Agenesis: A Systematic Review and Meta-analysis.

Authors:  K Carter; S Worthington
Journal:  J Dent Res       Date:  2015-04-16       Impact factor: 6.116

7.  Mutation in WNT10A is associated with an autosomal recessive ectodermal dysplasia: the odonto-onycho-dermal dysplasia.

Authors:  Lynn Adaimy; Eliane Chouery; Hala Megarbane; Salman Mroueh; Valerie Delague; Elsa Nicolas; Hanen Belguith; Philippe de Mazancourt; Andre Megarbane
Journal:  Am J Hum Genet       Date:  2007-08-09       Impact factor: 11.025

8.  Genome-wide association study identifies four loci associated with eruption of permanent teeth.

Authors:  Frank Geller; Bjarke Feenstra; Hao Zhang; John R Shaffer; Thomas Hansen; Ann-Louise Esserlind; Heather A Boyd; Ellen A Nohr; Nicholas J Timpson; Ghazaleh Fatemifar; Lavinia Paternoster; David M Evans; Robert J Weyant; Steven M Levy; Mark Lathrop; George Davey Smith; Jeffrey C Murray; Jes Olesen; Thomas Werge; Mary L Marazita; Thorkild I A Sørensen; Mads Melbye
Journal:  PLoS Genet       Date:  2011-09-08       Impact factor: 5.917

9.  Analysis of protein-coding genetic variation in 60,706 humans.

Authors:  Monkol Lek; Konrad J Karczewski; Eric V Minikel; Kaitlin E Samocha; Eric Banks; Timothy Fennell; Anne H O'Donnell-Luria; James S Ware; Andrew J Hill; Beryl B Cummings; Taru Tukiainen; Daniel P Birnbaum; Jack A Kosmicki; Laramie E Duncan; Karol Estrada; Fengmei Zhao; James Zou; Emma Pierce-Hoffman; Joanne Berghout; David N Cooper; Nicole Deflaux; Mark DePristo; Ron Do; Jason Flannick; Menachem Fromer; Laura Gauthier; Jackie Goldstein; Namrata Gupta; Daniel Howrigan; Adam Kiezun; Mitja I Kurki; Ami Levy Moonshine; Pradeep Natarajan; Lorena Orozco; Gina M Peloso; Ryan Poplin; Manuel A Rivas; Valentin Ruano-Rubio; Samuel A Rose; Douglas M Ruderfer; Khalid Shakir; Peter D Stenson; Christine Stevens; Brett P Thomas; Grace Tiao; Maria T Tusie-Luna; Ben Weisburd; Hong-Hee Won; Dongmei Yu; David M Altshuler; Diego Ardissino; Michael Boehnke; John Danesh; Stacey Donnelly; Roberto Elosua; Jose C Florez; Stacey B Gabriel; Gad Getz; Stephen J Glatt; Christina M Hultman; Sekar Kathiresan; Markku Laakso; Steven McCarroll; Mark I McCarthy; Dermot McGovern; Ruth McPherson; Benjamin M Neale; Aarno Palotie; Shaun M Purcell; Danish Saleheen; Jeremiah M Scharf; Pamela Sklar; Patrick F Sullivan; Jaakko Tuomilehto; Ming T Tsuang; Hugh C Watkins; James G Wilson; Mark J Daly; Daniel G MacArthur
Journal:  Nature       Date:  2016-08-18       Impact factor: 49.962

10.  A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13.

Authors:  Elizabeth J Leslie; Jenna C Carlson; John R Shaffer; Eleanor Feingold; George Wehby; Cecelia A Laurie; Deepti Jain; Cathy C Laurie; Kimberly F Doheny; Toby McHenry; Judith Resick; Carla Sanchez; Jennifer Jacobs; Beth Emanuele; Alexandre R Vieira; Katherine Neiswanger; Andrew C Lidral; Luz Consuelo Valencia-Ramirez; Ana Maria Lopez-Palacio; Dora Rivera Valencia; Mauricio Arcos-Burgos; Andrew E Czeizel; L Leigh Field; Carmencita D Padilla; Eva Maria C Cutiongco-de la Paz; Frederic Deleyiannis; Kaare Christensen; Ronald G Munger; Rolv T Lie; Allen Wilcox; Paul A Romitti; Eduardo E Castilla; Juan C Mereb; Fernando A Poletta; Iêda M Orioli; Flavia M Carvalho; Jacqueline T Hecht; Susan H Blanton; Carmen J Buxó; Azeez Butali; Peter A Mossey; Wasiu L Adeyemo; Olutayo James; Ramat O Braimah; Babatunde S Aregbesola; Mekonen A Eshete; Fikre Abate; Mine Koruyucu; Figen Seymen; Lian Ma; Javier Enríquez de Salamanca; Seth M Weinberg; Lina Moreno; Jeffrey C Murray; Mary L Marazita
Journal:  Hum Mol Genet       Date:  2016-03-30       Impact factor: 5.121

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  9 in total

1.  The Era of the Genome and Dental Medicine.

Authors:  K Divaris
Journal:  J Dent Res       Date:  2019-08       Impact factor: 6.116

Review 2.  Diagnosis of Tooth Agenesis in Childhood and Risk for Neoplasms in Adulthood.

Authors:  Priyanshi Ritwik; Kimberly K Patterson
Journal:  Ochsner J       Date:  2018

3.  Genetic Evidence Supporting the Role of the Calcium Channel, CACNA1S, in Tooth Cusp and Root Patterning.

Authors:  Virginie Laugel-Haushalter; Supawich Morkmued; Corinne Stoetzel; Véronique Geoffroy; Jean Muller; Anne Boland; Jean-François Deleuze; Kirsley Chennen; Waranuch Pitiphat; Hélène Dollfus; Karen Niederreither; Agnès Bloch-Zupan; Patimaporn Pungchanchaikul
Journal:  Front Physiol       Date:  2018-09-26       Impact factor: 4.566

4.  Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.

Authors:  Dmitry Shungin; Simon Haworth; Kimon Divaris; Cary S Agler; Yoichiro Kamatani; Myoung Keun Lee; Kelsey Grinde; George Hindy; Viivi Alaraudanjoki; Paula Pesonen; Alexander Teumer; Birte Holtfreter; Saori Sakaue; Jun Hirata; Yau-Hua Yu; Paul M Ridker; Franco Giulianini; Daniel I Chasman; Patrik K E Magnusson; Takeaki Sudo; Yukinori Okada; Uwe Völker; Thomas Kocher; Vuokko Anttonen; Marja-Liisa Laitala; Marju Orho-Melander; Tamar Sofer; John R Shaffer; Alexandre Vieira; Mary L Marazita; Michiaki Kubo; Yasushi Furuichi; Kari E North; Steve Offenbacher; Erik Ingelsson; Paul W Franks; Nicholas J Timpson; Ingegerd Johansson
Journal:  Nat Commun       Date:  2019-06-24       Impact factor: 14.919

5.  hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context.

Authors:  Zhanying Feng; Zhana Duren; Ziyi Xiong; Sijia Wang; Fan Liu; Wing Hung Wong; Yong Wang
Journal:  Commun Biol       Date:  2021-04-06

6.  Genome-Wide Association of New-Onset Hypertension According to Renin Concentration: The Korean Genome and Epidemiology Cohort Study.

Authors:  Sung-Bum Lee; Byoungjin Park; Kyung-Won Hong; Dong-Hyuk Jung
Journal:  J Cardiovasc Dev Dis       Date:  2022-03-30

7.  A novel EDAR missense mutation identified by whole-exome sequencing with non-syndromic tooth agenesis in a Chinese family.

Authors:  Hongyu Zhang; Xuanting Kong; Jiabao Ren; Shuo Yuan; Chunyan Liu; Yan Hou; Ye Liu; Lingqiang Meng; Guozhong Zhang; Qingqing Du; Wenjing Shen
Journal:  Mol Genet Genomic Med       Date:  2021-05-04       Impact factor: 2.183

Review 8.  The Changing Landscape in the Genetic Etiology of Human Tooth Agenesis.

Authors:  Meredith A Williams; Ariadne Letra
Journal:  Genes (Basel)       Date:  2018-05-16       Impact factor: 4.096

Review 9.  Wnt Pathway Extracellular Components and Their Essential Roles in Bone Homeostasis.

Authors:  Núria Martínez-Gil; Nerea Ugartondo; Daniel Grinberg; Susanna Balcells
Journal:  Genes (Basel)       Date:  2022-01-13       Impact factor: 4.096

  9 in total

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