| Literature DB >> 29364361 |
Aline Amaro1, Ana Beatriz Guerra1, Matheus Pippa Defino1, Luiz Angelo Vieira1, Carla Peluso1, Bianca Bianco1, Luciano Miller Reis Rodrigues1.
Abstract
OBJECTIVE: To evaluate the frequency of polymorphisms in the vascular endothelial growth factor (VEGF) gene, as well as to identify a potential risk haplotype among the polymorphic regions in this gene in patients with disc degeneration and in the Control Group.Entities:
Mesh:
Substances:
Year: 2017 PMID: 29364361 PMCID: PMC5875151 DOI: 10.1590/S1679-45082017AO4053
Source DB: PubMed Journal: Einstein (Sao Paulo) ISSN: 1679-4508
Vascular endothelial growth factor (VEGF) gene polymorphisms and respective TaqMan assays
| Gene | Localization | Polymorphism | rs | TaqMan Assay |
|---|---|---|---|---|
|
| 6: 43736389 | C2578A | rs699947 | C___8311602_10 |
| 6: 43737830 | G-1154A | rs1570360 | C___1647379_10 | |
| 6: 43738350 | G405C | rs2010963 | C___8311614_10 | |
| 6: 43737486 | T-460C | rs833061 | C___1647381_10 | |
| 6: 43752536 | C+936T | rs3025039 | C__16198794_10 |
Patient characteristics
| Characteristics | Disc degeneration | Control | |
|---|---|---|---|
| Age | 39.2±7.58 | 32.3±7.17 | |
| Sex, n (%) | |||
| Male | 53 (48) | 22 (21) | |
| Female | 57 (52) | 85 (79) | |
| Race, n (%) | |||
| Caucasian | 62 (56) | 69 (65) | |
| Black | 32 (29) | 26 (24) | |
| No answer | 16 (15) | 12 (11) | |
Frequency of vascular endothelial growth factor (VEGF) gene polymorphism in the population with intervertebral disc degeneration and in the control population
|
| Studied population | Genotypes | Alleles | p value | OR (95%CI) | HWE | |||
|---|---|---|---|---|---|---|---|---|---|
| n (%) | n (%) | n (%) | n (%) | n (%) | |||||
| rs3025039 | Control | CC | CT | TT | C | T | |||
| 81 (73.7) | 26 (23.6) | 3.(2.7) | 188 (85.5) | 32 (15.4) | 0.230 | 1.49 (0.83-2.65) | 0.875 | ||
| +936C/T | Cases | 85 (79.4) | 22 (20.6) | 0 (0) | 192 (89.7) | 22 (10.3) | 0.495 | ||
| rs833061 | Control | CC | CT | TT | C | T | |||
| 19 (17.3) | 58 (52.7) | 33 (30) | 96(43.6) | 124 (56.4) | 0.596 | 0.88 (0.60-1.30) | 0.752 | ||
| -460C/T | Cases | 13 (12.2) | 61 (57.0) | 33 (30.8) | 87 (40.7) | 127 (59.3) | 0.171 | ||
| rs699947 | Control | CC | CA | AA | C | A | |||
| 17 (15.5) | 55 (50.0) | 38 (34.5) | 89 (40.5) | 131 (59.5) | 0.475 | 0.76 (0.52-1.13) | 0.924 | ||
| -2578C/A | Cases | 9 (8.4) | 55 (51.4) | 43 (40.2) | 73 (34.1) | 141 (65.9) | 0.332 | ||
| rs1570360 | Control | GG | GA | AA | G | A | |||
| 67 (60.9) | 34 (30.9) | 9 (8.2) | 168 (76.4) | 52 (23.6) | 0.862 | 1.07 (0.68-1.67) | 0.321 | ||
| -1154G/A | Cases | 64 (59.8) | 38 (35.5) | 5 (4.7) | 166 (77.6) | 48 (22.4) | 0.977 | ||
| rs2010963 | Control | GG | GC | CC | G | C | |||
| 49 (44.5) | 51 (46.4) | 10(9.1) | 149 (67.7) | 71 (32.3) | 0.823 | 1.07 (0.71-1.60) | 0.817 | ||
| +405G/C | Cases | 50 (46.8) | 48(44.8) | 9 (8.4) | 148 (69.2) | 66 (30.8) | 0.867 | ||
SNP: single nucleotide polymorphism; OR: odds ratio; 95%CI: 95% of confidence interval; HWE: Hardy-Weinberg equilibrium.
Haplotype analysis of polymorphisms rs8330661, rs699947, rs1570360, rs2010963 and rs3025039 of the vascular endothelial growth factor gene in patients with disc degeneration and controls
| Haplotype | Disc degeneration (%) | Controls (%) | p value |
|---|---|---|---|
| TCGCC | 26.7 | 26.3 | 0.923 |
| TCGGC | 21.7 | 27.9 | 0.136 |
| CAAGC | 19.3 | 19.3 | 0.995 |
| CAGGC | 14.7 | 9.5 | 0.094 |
| TCGCT | 5.4 | 4.0 | 0.474 |
| CCGGC | 2.4 | 6.1 | 0.054 |
| CAAGT | 3.9 | 3.1 | 0.649 |
| CAGGT | 2.5 | 1.7 | 0.584 |
| TCGGT | 2.0 | 1.1 | 0.450 |
Haplotype of polymorphisms rs8330661(T/C), rs699947 (C/A), rs1570360 (G/A), rs2010963 (G/C) and rs3025039 (C/T).