| Literature DB >> 29363650 |
Qing-Lan Lyu1, Bi-Mei Jiang1, Bin Zhou2, Li Sun1, Zhong-Yi Tong3, Yuan-Bin Li1, Yu-Ting Tang1, Hui Sun1, Mei-Dong Liu1, Xian-Zhong Xiao1.
Abstract
BACKGROUND: Nucleolin (NCL) is the most abundant RNA-binding protein in the cell nucleolus and plays an important role in chromatin stability, ribosome assembly, ribosomal RNA maturation, ribosomal DNA transcription, nucleocytoplasmic transport, and regulation of RNA stability and translation efficiency. In addition to its anti-apoptotic properties, the underlying mechanisms associated with NCL-related roles in different cellular processes remain unclear. In this study, the effect of NCL on microRNA (miRNA) expression was evaluated by generating transgenic mice with myocardial overexpression of NCL and by analyzing microarrays of mature and precursor miRNAs from mice.Entities:
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Year: 2018 PMID: 29363650 PMCID: PMC5798056 DOI: 10.4103/0366-6999.223853
Source DB: PubMed Journal: Chin Med J (Engl) ISSN: 0366-6999 Impact factor: 2.628
Figure 1Establishment of transgenic mice with myocardial overexpression of NCL. (a) Identification of the founders (F0) by PCR. M: DNA marker; P: Positive control (α-MHC-NCL plasmid); B6: WT mouse; N, H2O: Negative control; α-MHC: Cardiac-specific promoter; α-MHC-NCL-F1: α-MHC-NCL forward primer; α-MHC-NCL-R1: α-MHC-NCL reverse primer; α-MHC: α-Myosin heavy chain; NCL: Nucleolin. (b) NCL expression in the myocardium of line 52 and 86 transgenic mice was analyzed by Western blot (n = 6). TG: Transgenic mice; WT: Wild-type mice; GAPDH: Glyceraldehyde 3-phosphate dehydrogenase. (c) Gray ratio analysis (NCL/GAPDH). *P < 0.05, line 52 transgenic mouse versus WT mouse; †P < 0.05, line 86 transgenic mouse (TG) versus WT mouse (n = 6). WT: Wild-type.
MiRNAs of NCL exhibiting increased expression in transgenic mice with myocardial overexpression of NCL
| miRNA | Fold change* | |
|---|---|---|
| miR-223 | 1.40 | <0.001 |
| miR-214 | 1.67 | <0.001 |
| miR-21 | 2.01 | 0.006 |
| miR-146b | 3.85 | 0.007 |
| miR-199a-5p | 1.39 | 0.005 |
| miR-208b | 3.14 | 0.006 |
| miR-29a | 1.31 | 0.017 |
| miR-222 | 1.57 | 0.019 |
| miR-146a | 1.52 | 0.023 |
| miR-34a | 1.57 | 0.046 |
| miR-690 | 1.70 | 0.022 |
*NCL transgenic mice (n = 3) versus wild-type mice (n = 3). Statistical significance was determined at P<0.05. NCL: Nucleolin; miRNA: MicroRNA.
MiRNAs exhibiting decreased expression in transgenic mice with myocardial overexpression of NCL
| miRNA | Fold change* | |
|---|---|---|
| miR-582-5p | 21.33 | <0.001 |
| miR-135a | 2.10 | 0.006 |
| miR-145 | 1.32 | 0.004 |
| miR-218 | 2.01 | 0.006 |
*NCL transgenic mice (n = 3) versus wild-type mice (n = 3). Statistical significance was determined at P<0.05. NCL: Nucleolin; miRNA: MicroRNA.
Figure 2Heat map of hierarchical clustering and expression analysis of miRNAs between transgenic mice with myocardial overexpression of NCL and WT mice (n = 6). Hierarchical clustering was performed with normalized miRNA data exhibiting a 1.3-fold change, which satisfied Student's t-test (P < 0.05). Rows: miRNA; columns; (A, B, and C) WT mice and (D, E, and F) transgenic mice with myocardial overexpression of NCL. For each miRNA, red indicates genes with high expression levels, whereas green denotes genes with low expression levels. MiRNA: MicroRNA; NCL: Nucleolin; WT: Wild-type.
Figure 3Changes in miRNA expression in transgenic mice (n = 6). Relative expression levels of miR-21, -208b, -146b, -218, and -135a were determined by qRT-PCR. Results indicated markedly (a) increased and (b) decreased miRNA expression in transgenic compared to WT mice (n = 6). *P < 0.05, Student's t-test. MiR: MicroRNA; qRT-PCR: Quantitative reverse transcription-polymerase chain reaction; SD: Standard deviation; TG-nuc: Transgenic; WT: Wild-type.
Predicted functions of genes targeted of differentially expressed miRNAs
| KEGG pathway | Hits | Total hits (%) | Enrichment | |
|---|---|---|---|---|
| Apoptosis | 11 | 95 (11.6) | 0.0000 | <0.001 |
| Calcium signaling pathway | 21 | 204 (10.3) | 0.0000 | <0.001 |
| Cell cycle | 15 | 140 (10.7) | 0.0001 | <0.001 |
| Chemokine signaling pathway | 24 | 203 (11.8) | 0.0000 | <0.001 |
| ErbB signaling pathway | 16 | 93 (17.2) | 0.0000 | <0.001 |
| Insulin signaling pathway | 21 | 146 (14.4) | 0.0000 | <0.001 |
| Jak/STAT signaling pathway | 20 | 160 (12.5) | 0.0000 | <0.001 |
| MAPK signaling pathway | 41 | 284 (14.4) | 0.0057 | <0.001 |
| Notch signaling pathway | 6 | 58 (10.3) | 0.0057 | 0.001 |
| P53 signaling pathway | 12 | 76 (15.8) | 0.0000 | <0.001 |
| PPAR signaling pathway | 6 | 86 (7.0) | 0.0300 | 0.003 |
| TGF-β signaling pathway | 14 | 92 (15.2) | 0.0000 | <0.001 |
| TLR signaling pathway | 10 | 104 (9.6) | 0.0007 | <0.001 |
| Ubiqutin signaling pathway | 16 | 151 (10.6) | 0.0000 | <0.001 |
| VEGF signaling pathway | 13 | 80 (16.3) | 0.0000 | <0.001 |
| Wnt signaling pathway | 27 | 162 (16.7) | 0.0000 | <0.001 |
KEGG: Kyoto encyclopedia of genes and genomes; ErbB: Epidermal growth factor receptor family; VEGF: Vascular endothelial growth factor; PPAR: Peroxisome proliferator-activated receptor; TGF-β: Transforming growth factor-β; TLR: Toll-like receptor; MAPK: Mitogen-activated protein kinase.
Figure 4NCL regulation of miR-21 expression in H9C2 cells. Relative miR-21 expression levels in the H2O2-PC 6h + NCL-siRNA group and the H2O2-PC 6 h + ctrl-siRNA group were determined by qRT-PCR (n = 6). *P < 0.01 versus H2O2-PC 6 h + ctrl-siRNA group. The results showed that miR-21 expression was significantly decreased in the H2O2-PC 6 h + NCL-siRNA compared to the H2O2-PC 6 h + ctrl-siRNA group. Ctrl: Control group; H2O2-PC: H2O2 preconditioning; miR: MicroRNA; NCL: Nucleolin; siRNA: Short interfering RNA.