Motiviation: Spatial Transcriptomics (ST) is a method which combines high resolution tissue imaging with high troughput transcriptome sequencing data. This data must be aligned with the images for correct visualization, a process that involves several manual steps. Results: Here we present ST Spot Detector, a web tool that automates and facilitates this alignment through a user friendly interface. Contact: jose.fernandez.navarro@scilifelab.se. Supplementary information: Supplementary data are available at Bioinformatics online.
Motiviation: Spatial Transcriptomics (ST) is a method which combines high resolution tissue imaging with high troughput transcriptome sequencing data. This data must be aligned with the images for correct visualization, a process that involves several manual steps. Results: Here we present ST Spot Detector, a web tool that automates and facilitates this alignment through a user friendly interface. Contact: jose.fernandez.navarro@scilifelab.se. Supplementary information: Supplementary data are available at Bioinformatics online.
Authors: Max Kaufmann; Anna-Lena Schaupp; Rosa Sun; Fabian Coscia; Calliope A Dendrou; Adrian Cortes; Gurman Kaur; Hayley G Evans; Annelie Mollbrink; José Fernández Navarro; Jana K Sonner; Christina Mayer; Gabriele C DeLuca; Joakim Lundeberg; Paul M Matthews; Kathrine E Attfield; Manuel A Friese; Matthias Mann; Lars Fugger Journal: Nat Neurosci Date: 2022-06-20 Impact factor: 28.771
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