Literature DB >> 29357303

Single-step genomic evaluation improves accuracy of breeding value predictions for resistance to infectious pancreatic necrosis virus in rainbow trout.

Grazyella M Yoshida1, Roberto Carvalheiro2, Francisco H Rodríguez3, Jean P Lhorente4, José M Yáñez5.   

Abstract

The aim of this study was to compare the accuracy of breeding values (EBVs) predicted using the traditional pedigree based Best Linear Unbiased Prediction (PBLUP) and the single-step genomic Best Linear Unbiased Prediction (ssGBLUP) for resistance against infectious pancreatic necrosis virus (IPNV) in rainbow trout. A total of 2278 animals were challenged against IPNV and 768 individuals were genotyped using a 57 K single nucleotide polymorphism array for rainbow trout. Accuracies for both methods were assessed using five-fold cross-validation. The heritabilities were higher for PBLUP compared to ssGBLUP. The ssGBLUP accuracies outperformed PBLUP in 7 and 11% for days to death and binary survival, respectively. The ssGBLUP could be an alternative approach to improve the accuracy of breeding values for resistance against infectious pancreatic necrosis virus in rainbow trout, using information from genotyped and non-genotyped animals.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bias; Heritability; Oncorhynchus mykiss; Pearson's correlation

Mesh：

Year:  2018        PMID： 29357303     DOI： 10.1016/j.ygeno.2018.01.008

Source DB:  PubMed          Journal:  Genomics        ISSN： 0888-7543            Impact factor:   5.736


  18 in total

1.  Genomic selection in American mink (Neovison vison) using a SSGBLUP model for size and quality traits graded on live mink.

Authors:  Trine M Villumsen; Guosheng Su; Bernt Guldbrandtsen; Torben Asp; Mogens S Lund
Journal:  J Anim Sci       Date:  2021-01-08       Impact factor: 3.159

2.  Genomic Selection in Aquaculture Species.

Authors:  François Allal; Nguyen Hong Nguyen
Journal:  Methods Mol Biol       Date:  2022

3.  Genome-Wide Association Analysis for Resistance to Infectious Pancreatic Necrosis Virus Identifies Candidate Genes Involved in Viral Replication and Immune Response in Rainbow Trout (Oncorhynchus mykiss).

Authors:  Francisco H Rodríguez; Raúl Flores-Mara; Grazyella M Yoshida; Agustín Barría; Ana M Jedlicki; Jean P Lhorente; Felipe Reyes-López; José M Yáñez
Journal:  G3 (Bethesda)       Date:  2019-09-04       Impact factor: 3.154

Review 4.  Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters.

Authors:  Kyall R Zenger; Mehar S Khatkar; David B Jones; Nima Khalilisamani; Dean R Jerry; Herman W Raadsma
Journal:  Front Genet       Date:  2019-01-23       Impact factor: 4.599

5.  Genome-Wide Association Study and Cost-Efficient Genomic Predictions for Growth and Fillet Yield in Nile Tilapia (Oreochromis niloticus).

Authors:  Grazyella M Yoshida; Jean P Lhorente; Katharina Correa; Jose Soto; Diego Salas; José M Yáñez
Journal:  G3 (Bethesda)       Date:  2019-08-08       Impact factor: 3.154

6.  Single-Step Genome-Wide Association Study for Resistance to Piscirickettsia salmonis in Rainbow Trout (Oncorhynchus mykiss).

Authors:  Agustin Barria; Rodrigo Marín-Nahuelpi; Pablo Cáceres; María E López; Liane N Bassini; Jean P Lhorente; José M Yáñez
Journal:  G3 (Bethesda)       Date:  2019-11-05       Impact factor: 3.154

7.  Genomic selection for white spot syndrome virus resistance in whiteleg shrimp boosts survival under an experimental challenge test.

Authors:  Marie Lillehammer; Rama Bangera; Marcela Salazar; Sergio Vela; Edna C Erazo; Andres Suarez; James Cock; Morten Rye; Nicholas Andrew Robinson
Journal:  Sci Rep       Date:  2020-11-25       Impact factor: 4.379

8.  The Effect of Integrating Genomic Information into Genetic Evaluations of Chinese Merino Sheep.

Authors:  Chen Wei; Hanpeng Luo; Bingru Zhao; Kechuan Tian; Xixia Huang; Yachun Wang; Xuefeng Fu; Yuezhen Tian; Jiang Di; Xinming Xu; Weiwei Wu; Hanikezi Tulafu; Maerziya Yasen; Yajun Zhang; Wensheng Zhao
Journal:  Animals (Basel)       Date:  2020-03-28       Impact factor: 2.752

9.  Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups.

Authors:  Fernando L Macedo; Ole F Christensen; Jean-Michel Astruc; Ignacio Aguilar; Yutaka Masuda; Andrés Legarra
Journal:  Genet Sel Evol       Date:  2020-08-12       Impact factor: 4.297

10.  Development and Validation of 58K SNP-Array and High-Density Linkage Map in Nile Tilapia (O. niloticus).

Authors:  Rajesh Joshi; Mariann Árnyasi; Sigbjørn Lien; Hans Magnus Gjøen; Alejandro Tola Alvarez; Matthew Kent
Journal:  Front Genet       Date:  2018-10-15       Impact factor: 4.599
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