Literature DB >> 29357071

Fragility Extraordinaire: Unsolved Mysteries of Chromosome Fragile Sites.

Wenyi Feng1, Arijita Chakraborty2.   

Abstract

Chromosome fragile sites are a fascinating cytogenetic phenomenon now widely implicated in a slew of human diseases ranging from neurological disorders to cancer. Yet, the paths leading to these revelations were far from direct, and the number of fragile sites that have been molecularly cloned with known disease-associated genes remains modest. Moreover, as more fragile sites were being discovered, research interests in some of the earliest discovered fragile sites ebbed away, leaving a number of unsolved mysteries in chromosome biology. In this review we attempt to recount some of the early discoveries of fragile sites and highlight those phenomena that have eluded intense scrutiny but remain extremely relevant in our understanding of the mechanisms of chromosome fragility. We then survey the literature for disease association for a comprehensive list of fragile sites. We also review recent studies addressing the underlying cause of chromosome fragility while highlighting some ongoing debates. We report an observed enrichment for R-loop forming sequences in fragile site-associated genes than genomic average. Finally, we will leave the reader with some lingering questions to provoke discussion and inspire further scientific inquiries.

Entities:  

Keywords:  Aphidicolin; Cancer; Chromosome fragility; Common and rare fragile sites; DNA double-strand breaks; DNA replication stress; Folate stress; Neurological disorders; R-loops

Mesh:

Year:  2017        PMID: 29357071      PMCID: PMC6055930          DOI: 10.1007/978-981-10-6955-0_21

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  222 in total

1.  Transcriptional map of chromosome region 6q16-->q21.

Authors:  E Karayianni; C Magnanini; V Orphanos; M Negrini; G M Maniatis; D H Spathas; G Barbanti-Brodano; C Morelli
Journal:  Cytogenet Cell Genet       Date:  1999

2.  Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination.

Authors:  Pablo Huertas; Andrés Aguilera
Journal:  Mol Cell       Date:  2003-09       Impact factor: 17.970

3.  Characterization of the human TESTIN gene localized in the FRA7G region at 7q31.2.

Authors:  C Tatarelli; A Linnenbach; K Mimori; C M Croce
Journal:  Genomics       Date:  2000-08-15       Impact factor: 5.736

4.  A Novel Recurrent Breakpoint Responsible for Rearrangements in the Williams-Beuren Region.

Authors:  Alberto Plaja; Neus Castells; Anna M Cueto-González; Miguel del Campo; Teresa Vendrell; Elisabet Lloveras; Luis Izquierdo; Mar Borregan; Benjamín Rodríguez-Santiago; Anna Carrió; Rosa Miró; Eduardo Tizzano
Journal:  Cytogenet Genome Res       Date:  2015-09-18       Impact factor: 1.636

5.  DNA polymerase alpha inhibition by aphidicolin induces gaps and breaks at common fragile sites in human chromosomes.

Authors:  T W Glover; C Berger; J Coyle; B Echo
Journal:  Hum Genet       Date:  1984       Impact factor: 4.132

6.  Chromosome abnormalities and rare fragile sites detected in azoospermia patients.

Authors:  N Seki; H Sumiya; J Shimazaki; Y Toyama; E Takahashi; M Murata; T Hori
Journal:  Jpn J Hum Genet       Date:  1992-09

Review 7.  Autism spectrum disorders--a genetics review.

Authors:  Judith H Miles
Journal:  Genet Med       Date:  2011-04       Impact factor: 8.822

8.  RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.

Authors:  Julie Nadel; Rodoniki Athanasiadou; Christophe Lemetre; N Ari Wijetunga; Pilib Ó Broin; Hanae Sato; Zhengdong Zhang; Jeffrey Jeddeloh; Cristina Montagna; Aaron Golden; Cathal Seoighe; John M Greally
Journal:  Epigenetics Chromatin       Date:  2015-11-16       Impact factor: 4.954

Review 9.  Out of balance: R-loops in human disease.

Authors:  Matthias Groh; Natalia Gromak
Journal:  PLoS Genet       Date:  2014-09-18       Impact factor: 5.917

10.  A CGG-repeat expansion mutation in ZNF713 causes FRA7A: association with autistic spectrum disorder in two families.

Authors:  Sofie Metsu; Jacqueline K Rainger; Kim Debacker; Birgitta Bernhard; Liesbeth Rooms; Daria Grafodatskaya; Rosanna Weksberg; Eric Fombonne; Martin S Taylor; Stephen W Scherer; R Frank Kooy; David R FitzPatrick
Journal:  Hum Mutat       Date:  2014-11       Impact factor: 4.878

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  6 in total

Review 1.  Replication initiation: Implications in genome integrity.

Authors:  Yo-Chuen Lin; Supriya G Prasanth
Journal:  DNA Repair (Amst)       Date:  2021-05-11

Review 2.  DNA Replication Stress and Chromosomal Instability: Dangerous Liaisons.

Authors:  Therese Wilhelm; Maha Said; Valeria Naim
Journal:  Genes (Basel)       Date:  2020-06-10       Impact factor: 4.096

3.  Oncogenic lncRNAs alter epigenetic memory at a fragile chromosomal site in human cancer cells.

Authors:  Ganesan Arunkumar; Songjoon Baek; David Sturgill; Minh Bui; Yamini Dalal
Journal:  Sci Adv       Date:  2022-03-02       Impact factor: 14.136

4.  Characterization of Chromosomal Instability in Glioblastoma.

Authors:  Elisa Balzano; Elena Di Tommaso; Antonio Antoccia; Franca Pelliccia; Simona Giunta
Journal:  Front Genet       Date:  2022-01-28       Impact factor: 4.599

5.  Seminal plasma miRNAs in Klinefelter syndrome and in obstructive and non-obstructive azoospermia.

Authors:  Federica Finocchi; Marianna Pelloni; Giancarlo Balercia; Francesco Pallotti; Antonio F Radicioni; Andrea Lenzi; Francesco Lombardo; Donatella Paoli
Journal:  Mol Biol Rep       Date:  2020-06-01       Impact factor: 2.742

Review 6.  Origin of Genome Instability and Determinants of Mutational Landscape in Cancer Cells.

Authors:  Sonam Mehrotra; Indraneel Mittra
Journal:  Genes (Basel)       Date:  2020-09-21       Impact factor: 4.096

  6 in total

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