Literature DB >> 29354270

Snapshot and crystallographic observations of kinetic and thermodynamic products for NO2S2 macrocyclic complexes.

In-Hyeok Park1, Yunji Kang1, Eunji Lee1, Huiyeong Ju1, Seulgi Kim1, Sujin Seo1, Jong Hwa Jung1, Shim Sung Lee1.   

Abstract

Direct observation and structural characterization of a kinetic product and a thermodynamic product for complexes with an NO2S2 macrocycle (L) are reported. L reacts with copper(I) iodide to give a mononuclear complex [Cu(L)]2(Cu2I4)·2CH2Cl2 (1), featuring three separate units. When cadmium(II) iodide was reacted with L, an anion-coordinated complex [Cd(L)I]2(Cd2I6)·4CH3CN (2) with a needle-type crystal shape was formed as the kinetic product. Interestingly, when the needle-type kinetic product was left undisturbed in the mother solution it gradually transformed to the pseudo-dimer complex [Cd2(L)2I2](Cd2I6) (3) with a brick-type crystal shape as the thermodynamic product. The dissolution-recrystallization process resulted in the elimination of the lattice solvent molecules (aceto-nitrile) in 2 and the contraction of two neighboring macrocyclic complex units [Cd(L)I]+, forming the pseudo-dimer 3via an intermolecular Cd⋯I interaction between two monomers. For the entire process from kinetic to thermodynamic products, it was possible to obtain sequential photographic snapshots, single-crystal X-ray structures and powder X-ray diffraction patterns. For the copper(I) and cadmium(II) complexes, competitive NMR results agree with the solid-state data that show copper(I) has a higher affinity for L than does cadmium(II).

Entities:  

Keywords:  crystal engineering; kinetic products; molecular crystals; single-crystal-to-single-crystal transformations; snapshots; thermodynamic products

Year:  2018        PMID: 29354270      PMCID: PMC5755576          DOI: 10.1107/S2052252517015081

Source DB:  PubMed          Journal:  IUCrJ        ISSN: 2052-2525            Impact factor:   4.769


Introduction

Similar to organic reactions, self-assembly of synthetic co­ordination processes affords not only thermodynamic products but also kinetic products when the energy for the latter is trapped in local minima (Percec et al., 2011 ▸; Gammon et al., 2010 ▸; Hwang et al., 2004 ▸; Hasenknopf et al., 1998 ▸). In principle, the reason for the two products is the difference in their activation energy: kinetic products form rapidly and they usually occur at lower temperature, while thermodynamic products form slowly or at higher temperatures (Fig. 1 ▸) (Martí-Rujas & Kawano, 2013 ▸; Martí-Rujas et al., 2011 ▸). The kinetic states in the self-assembly of coordination products play a crucial role in understanding the mechanism and final products as well as the fundamental aspects of functionalization (Percec et al., 2011 ▸; Gammon et al., 2010 ▸; Hwang et al., 2004 ▸; Hasenknopf et al., 1998 ▸; Martí-Rujas & Kawano, 2013 ▸; Martí-Rujas et al., 2011 ▸). However, it is hard to recognize or separate these two products completely and structurally characterize them in the single-crystal state as pure forms due to the difficulty of growing single crystals, because fast precipitation so often leads to the kinetic product. Kawano and co-workers proposed an ab initio powder X-ray diffraction (PXRD) approach as an alternative methodology to overcome these difficulties (Martí-Rujas & Kawano, 2013 ▸; Martí-Rujas et al., 2011 ▸). Recently, Ohtsu & Kawano (2017 ▸) highlighted the kinetic effect in self-assembly of coordination networks.
Figure 1

Reaction routes for a kinetic product via fast crystallization and a thermodynamic product via slow crystallization in the assembly reaction.

In our previous work, removal of the coordinated or noncoordinated solvent molecules of supramolecular complexes has played a key role in the reaction process between the kinetic and thermodynamic products (Lee et al., 2010 ▸, 2013 ▸; Ju et al., 2015 ▸, 2017 ▸). We recently isolated a 19-membered NO2S2 macrocycle L (see scheme) and a 38-membered macrocycle from the mixed products of the [1:1] and [2:2] cyclization reactions, respectively (Kang et al., 2016 ▸). In complexes with copper(I) iodide, the smaller macrocycle L forms a typical mononuclear complex in which all donors in the ring cavity cooperatively bind to the central copper(I) ion (Kang et al., 2016 ▸), while the larger macrocycle affords a tetranuclear bis(macrocycle) complex adopting a double-decker structure as a first example of this type (Kang et al., 2016 ▸). Sulfur donors in crown-type macrocycles have a tendency to lead metal coordination outside the cavity (exo-coordination) to form discrete or infinite complexes with some thia­philic metal ions (Lee, Kim et al., 2008 ▸; Lee, Lee et al., 2008 ▸; Park et al., 2012 ▸, 2014 ▸). However, the presence of a pyridine subunit in L is expected to locate the metal ion inside the cavity (Lee et al., 2016 ▸, 2015 ▸; Drahoš et al., 2017 ▸; Fedorov et al., 2017 ▸). Considering the binding affinity of L to metal ions with respect to their donor basicity, we have employed copper(I) and cadmium(II) ions (iodide form). In the present work, the ligand L yields two products of CdI2 with different crystal habits depending on the reaction time. Sometimes a mixture of crystalline products can be separated manually in pure form under a microscope because of their different crystal habits (Moreno-Calvo et al., 2010 ▸; Ryu et al., 2014 ▸; Park et al., 2014 ▸). In view of these intriguing results we decided to follow the reaction process more closely, in order to obtain insight into the structural and mechanical factors that may act. Fortunately, we were able to obtain a series of snapshot images for the two products with different crystal habits exhibiting growth–dissolution–recrystallization depending on the time between the kinetic and thermodynamic control processes. Here, we report several complexes of L which offer an opportunity to identify the kinetic and thermodynamic products via visual methods because of the slow reaction process and different crystal habits. The details are discussed below.

Results and discussion

Copper(I) iodide complex 1

L was prepared as described by us previously (Kang et al., 2016 ▸). The reaction of L in di­chloro­methane with CuI in aceto­nitrile afforded a colorless crystalline product, 1. The X-ray analysis revealed that 1 features three separate metal-containing units with the formula [Cu(L)]2(Cu2I4)·2CH2Cl2: two macrocyclic copper(I) complex cations [Cu(L)]+ and one anionic copper(I) iodide cluster (Cu2I4)2− (Fig. 2 ▸ and Table 1 ▸). Since the inversion center is located in the middle of the anionic cluster, the asymmetric unit contains one macrocyclic cation and one half of the cluster. In the macrocyclic complex cation, the copper(I) center binds to all donors of L in a twisted conformation, adopting a distorted square-pyramidal coordination geometry (τ = 0.25; Addison et al., 1984 ▸) with atoms N1, O1, O2 and S1 defining a square plane, and atom S2 the apex. The Cu2I4 cluster is planar, similar to other examples reported (Haase et al., 2011 ▸; Basu et al., 1987 ▸; Kia et al., 2007 ▸; Bhaduri et al., 1991 ▸). The Cu1—N1 bond distance [2.032 (8) Å] is consistent with the strong coordination of copper(I) toward the pyridine N atom. The Cu—S bond distances [Cu1—S1 = 2.274 (3) Å and Cu1—S2 = 2.255 (3) Å] are typical and the Cu—O bond distances [Cu1—O1 = 2.712 (7) Å and Cu1—O2 = 2.657 (8) Å] are also normal.
Figure 2

The molecular structure of 1, [Cu(L)]2(Cu2I4)·2CH2Cl2, showing the three separate metal-containing units. The noncoordinated solvent molecule has been omitted.

Table 1

Crystallographic data and refinement parameters

  1 2 3 4 5
CCDC refcode15669381566939156694015669411566942
FormulaC30H29Cl2Cu2I2NO2 S2 C29H27Cd2I4NO2S2 C58H54Cd4I8N2O4SC116H106Cd8I16N4O8S8 C29H27CdCuI3NO2S2
Formula weight951.441218.032436.074870.121042.28
Crystal systemTriclinicMonoclinicTriclinicTriclinicTriclinic
Space group C2/c
a (Å)11.7925 (4)23.3017 (6)11.660 (3)11.3166 (11)8.9645 (2)
b (Å)11.9665 (4)13.4569 (4)12.147 (3)13.4404 (15)14.4098 (3)
c (Å)13.4375 (4)26.9935 (7)12.585 (4)24.586 (2)14.8826 (3)
α (°)93.290 (2)9075.142 (11)86.655 (7)65.8530 (10)
β (°)95.681 (2)102.9630 (10)87.056 (13)89.396 (6)73.3860 (10)
γ (°)118.683 (2)9086.996 (13)78.371 (7)81.5460 (10)
V3)1643.38 (10)8248.6 (4)1719.23656.6 (6)1680.04 (6)
Z 28112
D calc (Mg m−3)1.9232.0922.3532.2122.060
μ (mm−1)3.4914.1584.9774.6804.172
max (°)52.0052.0052.0048.0052.00
Reflections collected2252536289286902378128556
Independent reflections6174 (R int = 0.0384)8103 (R int = 0.0499)6745 (R int = 0.0283)8432 (R int = 0.0842)6602 (R int = 0.0254)
Goodness-of-fit on F 2 1.1131.1121.0621.1291.042
R 1, wR 2 [I > 2σ(I)]0.0738, 0.21910.0432, 0.09920.0205, 0.04400.1848, 0.41910.0168, 0.0376
R 1, wR 2 (all data)0.0935, 0.23360.0535, 0.10250.0247, 0.04570.2147, 0.43040.0194, 0.0388
Recently, we have reported a copper(I) iodide complex of L with the formula [Cu(L)]I3·ether isolated from di­chloro­methane/aceto­nitrile/ether (Kang et al., 2016 ▸). In this case, the cationic complex part [Cu(L)]+ is also five-coordinate, adopting a distorted square-pyramidal geometry (τ = 0.31), but one triiodide ion (I3 −) exists as a counteranion due to the partial oxidation of copper(I) to copper(II) (Kang et al., 2016 ▸; Lee et al., 2017 ▸).

Cadmium(II) iodide complexes: kinetic product 2 and thermodynamic product 3

It is notable that the complexation of L with CdI2 yields two products whose crystal shapes are different, 2 forming needles and 3 forming bricks, and their compositions change depending on the reaction time (Fig. 3 ▸). In these observations, we provide decisive evidence for the stepwise formation of a kinetic product and a thermodynamic product, not only to the naked eye but also via a crystallographic approach. The details are discussed in the next section.
Figure 3

Cartoon presentation of time-dependent crystal growth, dissolution and recrystallization in the mother solution: 2 forms needles and 3 forms bricks.

When L was reacted with CdI2 in di­chloro­methane/aceto­nitrile, as mentioned above, two products, 2 and 3, identified by eye due to their different crystal habits, were isolated. Thus, time-series snapshots for the single-crystal growth process were recorded by optical microscope photography (Fig. 4 ▸, see also Fig. S1 and Movie S1 in the supporting information). Indeed, slow evaporation of this reaction mixture for 10 h gave a colorless needle-shaped crystalline product 2 (Fig. 4 ▸ a). When the needle-shaped product 2 was left undisturbed in the mother solution, a small brick-shaped crystalline product 3 appeared after 34 h (Fig. 4 ▸ b). Thereafter, the size and number of crystals of the brick-shaped product 3 increased and the needle-shaped crystals of 2 gradually disappeared (Figs. 4 ▸ c–4 ▸ e). After 96 h, 2 disappeared completely and only 3 was present (Fig. 4 ▸ f).
Figure 4

Time-series snapshot optical microscope images for 2 and 3 in the mother solution. (a) Needle-shaped crystals of 2 obtained after 10 h. (b) Brick-shaped crystals of 3 appear (orange circles). (c)–(f) The needles of 2 disappear gradually and the number and size of the bricks of 3 increase. (g) Only the brick-shaped crystals of 3 exist after 96 h.

Single-crystal X-ray analysis revealed that the two observed types of crystals, 2 and 3, have different cell parameters, compositions and structures (Moreno-Calvo et al., 2010 ▸; Ryu et al., 2014 ▸; Park et al., 2014 ▸). For instance, the needle-shaped product, 2, crystallizes in the monoclinic space group C2/c with the formula [Cd(L)I]2(Cd2I6)·4CH3CN (Fig. 5 ▸ a, and Table S2 in the supporting information), while the brick-shaped product, 3, crystallizes in the triclinic space group with the formula [Cd2(L)2I2](Cd2I6) (Fig. 5 ▸ b, and Table S3 in the supporting information]. Comparison of the PXRD patterns for each separate product and the simulated patterns for the corresponding single crystals indicates that the two species are effectively separate, showing bulk purity (Fig. 6 ▸). Even though both complexes share some common features, it is of great interest to compare these two structures to reveal what happens during the reaction process in solution.
Figure 5

Molecular structures of (a) 2, [Cd(L)I]2(Cd2I6)·4CH3CN, and (b) 3, [Cd2(L)2I2](Cd2I6), isolated from the dissolution–recrystallization process involving the loss of lattice solvent molecules from 2 (aceto­nitrile, not shown) in solution. The anionic (Cd2I6)2− clusters in both products have been omitted. The distances between Cd1 and I1A are 3.5768(8) Å (red arrow) in 2 and 3.3827(8) Å (dashed lines) in 3.

Figure 6

The PXRD patterns of 2, 3 and 4.

Again, complex 2 contains three separate metal-containing units: two macrocyclic complex cation units [Cd(L)I]+ and one anionic cadmium(II) iodide cluster unit (Cd2I6)2− (not shown in Fig. 5 ▸ a). In 2, the two macrocyclic complex units face each other with a Cd1⋯I1A distance of 3.5768 (8) Å, which is similar to the sum of the van der Waals radii r VDW (3.56 Å; Bondi, 1964 ▸) (Fig. 5 ▸ a). The CdII center in the macrocyclic complex unit is six-coordinate, being bound to all five donors from L which adopts a bent and twisted conformation. The coordination sphere is completed by one iodide anion, with the Cd1—I1 bond distance being 2.7422 (7) Å. The key structural feature of 3 is its pseudo-dimeric form via the associated change in the Cd1A⋯I1 distance from 3.5768 (8) to 3.3827 (8) Å; the latter value is shorter than its r VDW (3.56 Å) (Fig. 5 ▸ b). Large conformation changes in the macrocycle are also observed due to the removal of the lattice solvent molecules and the dimeric interaction. The metal centers in both 2 and 3 are six-coordinate, adopting a monocapped square-pyramidal geometry (Fig. 7 ▸). However, the rearrangement from 2 to 3 involves geometric changes to the coordination sphere as well as conformational changes of L. Considering the interatomic distances between Cd1A and I1, it might be concluded that the removal of the lattice aceto­nitrile molecules in 2 induces the contraction of the molecule, resulting in the pseudo-dimer formation of 3.
Figure 7

The coordination geometry of the cadmium(II) center in (a) 2 and (b) 3, showing a distorted monocapped square-pyramidal arrangement.

Some modified crystallization approaches were also carried out, affording isolation of brick-shaped 3 directly from the reaction mixture (Lee et al., 2010 ▸, 2013 ▸; Ju et al., 2015 ▸, 2017 ▸). For example, under identical reaction conditions but with stirring at 50°C for 20 min (Fig. 5 ▸), a solid precipitate was obtained. The PXRD pattern confirmed that this solid is pure complex 3 (Fig. 6 ▸), suggesting direct preparation at the higher temperature as depicted in Fig. 1 ▸. Alternatively, when several single crystals of 3 were added as seeds to the corresponding freshly prepared reaction mixture solution, a large quantity of brick-shaped 3 was obtained via extra crystal nucleation and crystal growth without the appearance of the metastable species 2. Furthermore, solvent diffusion of a di­chloro­methane solution of L into an aceto­nitrile solution of cadmium(II) iodide gave only product 3. When we consider the snapshot images together with the high temperature and the seeding approaches showing direct preparation of 3, the observed crystal habit changing from 2 to 3 in the mother solution can be understood in terms of the reaction process, from kinetic product 2 to thermodynamic product 3. Earlier, our time-dependent crystallization experiments showed that a one-dimensional silver(I) perchlorate coordination polymer of an O2S2 macrocycle is a kinetic product and transforms into a thermodynamically more stable two-dimensional network (Lee et al., 2010 ▸). More recently, our group introduced a disilver(I) solvato-complex of a 40-membered N4O4S4 macrocycle as a kinetic product which shows rearrangement to the desolvated thermodynamic product (Lee et al., 2013 ▸).

A single-crystal-to-single-crystal transformation of 2 in air

In air, unlike in the mother solution, kinetic product 2, [Cd(L)I]2(Cd2I6)·4CH3CN, showed a different transformation behavior (Fig. 8 ▸). In 2, as mentioned, four lattice aceto­nitrile molecules are trapped in each formula unit. When colorless crystals of 2 were filtered off and isolated from the mother solution and kept in air, we confirmed that three lattice aceto­nitrile molecules were removed by sublimation within several hours to give compound 4, [Cd(L)I]2[(Cd2I6)·CH3CN] (Fig. 8 ▸). During this partial sublimation process, the crystals lost transparency but it was possible to obtain the single-crystal structure. Notably, the removal of the lattice solvent molecules by partial sublimation also induced some structural changes in the complex.
Figure 8

The SCSC transformation of 2 (top) to 4 (bottom) via the partial removal of the lattice solvent molecules. The anionic clusters (Cd2I6)2− have been omitted.

Unlike the parent complex 2, for example, complex 4 has two crystallographically different CdII atoms (Cd1 and Cd2). In addition, some changes in the pairwise interaction between two macrocyclic complex units were observed: the distance between Cd1A and I1 in 2 is 3.5768 (8) Å, while it is 3.415 (7) Å (Cd1A⋯I1) and 3.690 (7) Å (Cd2⋯I2B) in 4. Due to the sublimation of the solvent molecules followed by the structural change, 4 shows a high R 1 value (0.1848; Table 1 ▸). Recently, we reported some examples of the sliding re­arrangement of a double-decker type complex (Kang et al., 2016 ▸) of the [2:2] cyclization analogue of L and a one-dimensional coordination polymer of the bis-di­thia­macrocycle (Kim et al., 2016 ▸) via a single-crystal-to-single-crystal (SCSC) transformation upon desolvation in air. The homogeneity of 4 was confirmed by PXRD patterns (Fig. 6 ▸). Exposure of 4 to aceto­nitrile liquid and vapor results in no structural change, suggesting that the above structural transformation is not reversible.

Complexation with a mixture of CuI and CdI2

As an extension of the above homonuclear copper(I) iodide complex 1 and cadmium(II) iodide complexes 2–4, we investigated the relative reactivity of copper(I) and cadmium(II) as soft acids towards L in both the solid and solution states. When a mixture of copper(I) iodide and cadmium(II) iodide was reacted with L in aceto­nitrile/di­chloro­methane, a yellow block-shaped crystalline product 5 was isolated. X-ray analysis revealed that 5 contains three separate metal-containing parts in the formula [Cu(L)]2(Cd2I6) (Fig. 9 ▸ a): two macrocyclic monocopper(I) complex cations and one (Cd2I6)2− cluster anion, indicating a preferential coordination affinity of copper(I) over cadmium(II) towards L. Since the inversion center exists in the middle of the (Cd2I6)2− cluster, the asymmetric unit contains one macrocyclic copper(I) complex unit and half a cluster. The copper(I) center inside the cavity is five-coordinate, being bound by all the donors from L in a twisted conformation. The CuI coordination geometry is a distorted square-pyramidal geometry (τ = 0.29) with donors S1, O1, O2 and N1 of L defining a distorted square plane and the S2 donor in an axial position (Fig. 9 ▸ b).
Figure 9

The molecular structure of 5, [Cu(L)]2(Cd2I6), showing the three separate parts. (a) A general view and (b) the distorted square-pyramidal coordination geometry of the copper(I) center. [Symmetry code: (A) .]

Comparative NMR study of CuI and CdII complexation

Comparative NMR experiments for the competition reactions of copper(I) and cadmium(II) toward L were also performed. In Fig. 10 ▸, the signals of the aliphatic protons (H1–H3) in L are well resolved and identified. As shown in Fig. 10 ▸(a) line (B), the addition of 1–4 equivalents of copper(I) causes downfield shifts for H1–H3 of 0.15–0.3 p.p.m. and indicates that complexation with fast ligand exchange is occurring on the NMR time scale. In this case, the chemical shift changes are H3 > H2 > H1, indicating that copper(I) favors binding to the S donors rather than to the O donors. Further addition of cadmium(II) (1–4 equivalents) led to no significant chemical shift changes [Fig. 10 ▸ a lines (F) and (I)], suggesting that the copper(I) complex formed earlier is maintained and no further reaction occurs (as proposed in Fig. 10 ▸ c).
Figure 10

1H NMR spectra of the aliphatic region for L in CD3CN via stepwise addition of (a) Cd2+ and Cu+, and (b) Cu+ and Cd2+. [L] = 5 mM. (c) The proposed complexation equilibria between the corresponding species in solution.

Comparative NMR experiments for the above competition reaction were also performed in the reverse order of salt addition [that is, cadmium(II) followed by copper(I)]. As shown in Fig. 10 ▸(b) lines (A) and (E), the cadmium(II) complexation proceeds by two steps. First, the addition of one equivalent of cadmium(II) causes downfield shifts for H1–H3. On addition of another one equivalent of cadmium(II), further downfield shifts of each peak were observed, in keeping with the formation of a dicadmium(II) species [Cd2 L]4+ (Fig. 10 ▸ b). On addition of one equivalent of copper(I), larger upfield shifts occur and the spectral pattern in Fig. 10 ▸(a) line (I) becomes the same as that shown in Fig. 10 ▸(b) line (I), suggesting that the respective reactions finally reach the formation of the monocopper(I) species [CuL]+ (Fig. 10 ▸ c, anticlockwise direction starting from L). Again, this result agrees with the solid-state data in showing that copper(I) has a higher affinity for L than does cadmium(II). Considering the size effect of the metal ions [CdII (4d 10) is slightly larger than CuI (3d 10)] on their affinity towards the 19-membered ring cavity of L, CdII is expected to have a higher affinity, unlike the results obtained from the X-ray and NMR data in this work. Consequently, the greater thia­philic nature of CuI than of CdII could be the main reason associated with the shorter bond distances of CuI—S (2.25–2.27 Å) in 1 than those of CdII—S (2.67–2.74 Å) in 2.

Conclusions

In summary, sequential photographic snapshots, single-crystal X-ray structures and PXRD patterns of cadmium(II) iodide complexes of an NO2S3 macrocycle enable us to identify kinetic and thermodynamic products. From the visual data, it was found that the reaction process from the kinetic product to the thermodynamic product resulted in the elimination of the lattice solvents and the contraction of two facing macrocyclic complex units, resulting in the formation of a pseudo-dimer via a Cd⋯I interaction. In the competition reactions, L shows preferential complexation behavior towards copper(I) over cadmium(II) in both solid and solution states.

Experimental

General

All chemicals were purchased from commercial sources and used as received. All solvents used were of reagent grade. Elemental analyses were carried out on a LECO CHNS-932 elemental analyzer. Thermogravimetric analyses were recorded on a TA Instruments TGA-Q50 thermogravimetric analyzer. The FT–IR spectra were recorded using a Thermo Fisher Scientific Nicolet iS 10 FT–IR spectrometer with KBr pellets.

Preparation of [Cu(L)]2(Cu2I4)·2CH2Cl2, 1

CuI (12 mg, 0.062 mmol) was dissolved in methanol (l.0 ml) and added to a solution of L (10 mg, 0.021 mmol) in di­chloro­methane (l.0 ml). A white precipitate formed immediately and this was filtered off. Colorless crystalline 1 suitable for X-ray analysis was obtained by vapor diffusion of di­ethyl ether into a dimethylformamide (0.5 ml) solution of the precipitate (yield 35%). Analysis, calculated for C60H58Cl4Cu4I4N2O4S4: C 38.98, H 3.10, N 1.54, S 7.05%; found: C 39.23, H 3.27, N 1.44, S 6.83%. IR (KBr pellet, ν, cm−1): 2925, 2855, 1719, 1655, 1560, 1459, 1377, 1341, 1296, 1245, 1219, 1186, 1159, 1106, 1048, 1027, 807, 753.

Preparation of [Cd(L)I]2(Cd2I6)·4CH3CN, 2, and [Cd2(L)2I2](Cd2I6), 3

A solution of CdI2 (24 mg, 0.066 mmol) in aceto­nitrile (0.5 ml) was added to a solution of L (10 mg, 0.021 mmol) in di­chloro­methane (0.5 ml). Slow evaporation of the solution afforded two kinds of crystals: at the beginning (within 2 d) colorless needle-shaped crystals of 2 formed in the vial, which converted to the pale-yellow block-shaped crystals of 3 after 4 d. Separately, white precipitates of 2 and 3 were obtained from a reaction mixture of L and CdI2 in aceto­nitrile/di­chloro­methane at room temperature and 50°C for 10 min, respectively. For 3, yield 70%. Analysis, calculated for C58H54Cd4I8N2O4S4: C 28.59, H 2.23, N 1.15, S 5.26%; found: C 28.47, H 2.14, N 1.35, S 5.45%. IR (KBr pellet, ν, cm−1): 2958, 2920, 2863, 1925, 1719, 1686, 1604, 1579, 1560, 1543, 1508, 1490, 1455, 1440, 1400, 1385, 1372, 1290, 1277, 1246, 1220, 1181, 1161, 1111, 1099, 1047, 1032, 943, 902, 869, 842.

Preparation of [Cd(L)I]2(Cd2I6)2·CH3CN, 4

Single crystals of 4 were obtained from single crystals of 2 which had been kept at room temperature for 10 min in air. Analysis, calculated for C120H114Cd8I16N6O8S8: C 29.09, H 2.32, N 1.70, S 5.18%; found: C 28.75, H 2.18, N 1.24, S 5.44%. IR (KBr pellet, ν, cm−1): 3051, 2957, 2919, 2344, 1719, 1638, 1604, 1579, 1560, 1543, 1490, 1454, 1440, 1412, 1400, 1385, 1371, 1292, 1276, 1246, 1220, 1193, 1180, 1160, 1111, 1098, 1047, 1032, 1012, 902, 867, 841, 807.

Preparation of [Cu(L)]2(Cd2I6), 5

CuI (12 mg, 0.062 mmol) and CdI2 (24 mg, 0.066 mmol) were dissolved in aceto­nitrile (l.0 ml) and the solution was layered on a solution of L (10 mg, 0.08 mmol) in di­chloro­methane (l.0 ml). The (layered) mixture afforded a yellow crystalline product, 5, suitable for X-ray analysis (yield 45%). Analysis, calculated for C58H54Cd2Cu2I6N2O4S4: C 33.42, H 2.61, N 1.34, S 6.15%; found: C 33.77, H 2.53, N 1.28, S 6.41%. IR (KBr pellet, ν, cm−1): 2966, 2926, 2855, 1871, 1735, 1655, 1560, 1491, 1459, 1490, 1459, 1253, 1244, 1218, 1188, 1161, 1106, 1075, 1048, 1023, 958, 939, 908, 758, 742.

X-ray crystallographic analysis

Crystal data for 1–5 were collected at 173 K on a Bruker SMART APEXII ULTRA diffractometer equipped with graphite monochromated Mo Kα radiation (λ = 0.71073 Å) generated by a rotating anode. The cell parameters for the compounds were obtained from a least-squares refinement of the spot (from 36 collected frames). Data collection, data reduction and absorption correction were carried out using the software package APEX2 (Bruker, 2008 ▸). All calculations for the structure determination were carried out using the SHELXTL package (Bruker, 2001 ▸). In all cases, all non-hydrogen atoms were refined anisotropically, and all hydrogen atoms were placed in idealized positions and refined iso­tropically in a riding manner along with their respective parent atoms. Due to the sublimation of the solvent molecules (aceto­nitrile) of 2 followed by a structural change, 4 shows relatively high R values. Since the remaining lattice solvent molecules (four aceto­nitrile molecules in 2 and one aceto­nitrile molecule in 4) are highly disordered, the contribution of solvent electron density was removed using the SQUEEZE routine in PLATON (Spek, 2009 ▸). Several SHELXTL restraints were used in the refinements of 1 and 4. In 1, SADI was used to keep within a reasonable geometry for the non-disordered part of the di­chloro­methane molecule. In 4, SADI, DFIX, SIMU and soft constraints were used to keep within a reasonable geometry for the non-disordered part of the macrocyclic ligand. Relevant crystal data collection and refinement data for the crystal structures of 1–5 are summarized in Table 1 ▸, and in Tables S1–S5 in the supporting information. Crystal structure: contains datablock(s) 1, 2, 3, 4, 5. DOI: 10.1107/S2052252517015081/yc5012sup1.cif Structure factors: contains datablock(s) 1. DOI: 10.1107/S2052252517015081/yc50121sup2.hkl Structure factors: contains datablock(s) 2. DOI: 10.1107/S2052252517015081/yc50122sup3.hkl Structure factors: contains datablock(s) 3. DOI: 10.1107/S2052252517015081/yc50123sup4.hkl Structure factors: contains datablock(s) 4. DOI: 10.1107/S2052252517015081/yc50124sup5.hkl Structure factors: contains datablock(s) 5. DOI: 10.1107/S2052252517015081/yc50125sup6.hkl Click here for additional data file. Time-series snapshots for the single-crystal growth process, Fig. S1. DOI: 10.1107/S2052252517015081/yc5012sup7.gif Click here for additional data file. Time-series snapshots for the single-crystal growth process, Movie S1. DOI: 10.1107/S2052252517015081/yc5012sup8.mov Additional tables. DOI: 10.1107/S2052252517015081/yc5012sup9.pdf CCDC references: 1566938, 1566939, 1566940, 1566941, 1566942
  19 in total

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