Literature DB >> 29353911

Miscellanea Dependent generalized functional linear models.

S Jadhav1, H L Koul1, Q Lu2.   

Abstract

This paper considers testing for no effect of functional covariates on response variables in multivariate regression. We use generalized estimating equations to determine the underlying parameters and establish their joint asymptotic normality. This is then used to test the significance of the effect of predictors on the vector of response variables. Simulations demonstrate the importance of considering existing correlation structures in the data. To explore the effect of treating genetic data as a function, we perform a simulation study using gene sequencing data and find that the performance of our test is comparable to that of another popular method used in sequencing studies. We present simulations to explore the behaviour of our test under varying sample size, cluster size and dimension of the parameter to be estimated, and an application where we are able to confirm known associations between nicotine dependence and neuronal nicotinic acetylcholine receptor subunit genes.

Entities:  

Keywords:  Cluster data; Family sequencing data; Functional data analysis; Generalized estimating equation

Year:  2017        PMID: 29353911      PMCID: PMC5771479          DOI: 10.1093/biomet/asx044

Source DB:  PubMed          Journal:  Biometrika        ISSN: 0006-3444            Impact factor:   2.445


  7 in total

1.  Generalized Functional Linear Models with Semiparametric Single-Index Interactions.

Authors:  Yehua Li; Naisyin Wang; Raymond J Carroll
Journal:  J Am Stat Assoc       Date:  2010-06-01       Impact factor: 5.033

2.  In search of rare variants: preliminary results from whole genome sequencing of 1,325 individuals with psychophysiological endophenotypes.

Authors:  Scott I Vrieze; Stephen M Malone; Uma Vaidyanathan; Alan Kwong; Hyun Min Kang; Xiaowei Zhan; Matthew Flickinger; Daniel Irons; Goo Jun; Adam E Locke; Giorgio Pistis; Eleonora Porcu; Shawn Levy; Richard M Myers; William Oetting; Matt McGue; Goncalo Abecasis; William G Iacono
Journal:  Psychophysiology       Date:  2014-12       Impact factor: 4.016

3.  Variable Selection in Generalized Functional Linear Models.

Authors:  J Gertheiss; A Maity; A-M Staicu
Journal:  Stat       Date:  2013

4.  Psychometric and genetic architecture of substance use disorder and behavioral disinhibition measures for gene association studies.

Authors:  Brian M Hicks; Benjamin D Schalet; Stephen M Malone; William G Iacono; Matt McGue
Journal:  Behav Genet       Date:  2010-12-12       Impact factor: 2.805

5.  A map of human genome variation from population-scale sequencing.

Authors:  Gonçalo R Abecasis; David Altshuler; Adam Auton; Lisa D Brooks; Richard M Durbin; Richard A Gibbs; Matt E Hurles; Gil A McVean
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

6.  GEE-based SNP set association test for continuous and discrete traits in family-based association studies.

Authors:  Xuefeng Wang; Seunggeun Lee; Xiaofeng Zhu; Susan Redline; Xihong Lin
Journal:  Genet Epidemiol       Date:  2013-10-25       Impact factor: 2.135

7.  Multiple distinct risk loci for nicotine dependence identified by dense coverage of the complete family of nicotinic receptor subunit (CHRN) genes.

Authors:  Nancy L Saccone; Scott F Saccone; Anthony L Hinrichs; Jerry A Stitzel; Weimin Duan; Michele L Pergadia; Arpana Agrawal; Naomi Breslau; Richard A Grucza; Dorothy Hatsukami; Eric O Johnson; Pamela A F Madden; Gary E Swan; Jen C Wang; Alison M Goate; John P Rice; Laura J Bierut
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2009-06-05       Impact factor: 3.568

  7 in total
  1 in total

1.  Integrative functional linear model for genome-wide association studies with multiple traits.

Authors:  Yang Li; Fan Wang; Mengyun Wu; Shuangge Ma
Journal:  Biostatistics       Date:  2022-04-13       Impact factor: 5.899

  1 in total

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