Literature DB >> 29353448

1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice.

Lucila Andrea Acevedo1, Linda K Nicholson2.   

Abstract

Cyclophilins are enzymes that catalyze the isomerization of a prolyl-peptide bond and are found in both prokaryotes and eukaryotes. LRT2 (also known as OsCYP2) is a cyclophilin in rice (Oryza sativa), that has importance in lateral root development and stress tolerance. LRT2 is 172 amino acids long and has a molecular weight of 18.3 kDa. Here, we report the backbone and sidechain resonance assignments of 1H, 13C, 15N in the LRT2 protein using several 2D and 3D heteronuclear NMR experiments at pH 6.7 and 298 K. Our chemical shift data analysis predicts a secondary structure like the cytosolic wheat cyclophilin TaCypA-1 with 87.7% sequence identity. These assignments will be useful for further analysis in the NMR studies for function and structure of this enzyme.

Entities:  

Keywords:  Lateral root development; NMR resonance assignments; Protein chemical shift assignment; Rice cyclophilin; TALOS-N prediction

Mesh:

Substances:

Year:  2018        PMID: 29353448      PMCID: PMC5944331          DOI: 10.1007/s12104-018-9803-x

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  14 in total

Review 1.  Prolyl cis-trans isomerization as a molecular timer.

Authors:  Kun Ping Lu; Greg Finn; Tae Ho Lee; Linda K Nicholson
Journal:  Nat Chem Biol       Date:  2007-10       Impact factor: 15.040

2.  A gain-of-function mutation in OsIAA11 affects lateral root development in rice.

Authors:  Zhen-Xing Zhu; Yu Liu; Shao-Jun Liu; Chuan-Zao Mao; Yun-Rong Wu; Ping Wu
Journal:  Mol Plant       Date:  2011-09-13       Impact factor: 13.164

3.  Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.

Authors:  Hongwei Jing; Xiaolu Yang; Jian Zhang; Xuehui Liu; Huakun Zheng; Guojun Dong; Jinqiang Nian; Jian Feng; Bin Xia; Qian Qian; Jiayang Li; Jianru Zuo
Journal:  Nat Commun       Date:  2015-06-22       Impact factor: 14.919

4.  A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.

Authors:  Peng Cui; Hongbo Liu; Songlin Ruan; Basharat Ali; Rafaqat Ali Gill; Huasheng Ma; Zhifu Zheng; Weijun Zhou
Journal:  J Integr Plant Biol       Date:  2017-05-03       Impact factor: 7.061

Review 5.  Structural Biology of Nuclear Auxin Action.

Authors:  Dhurvas Chandrasekaran Dinesh; Luz Irina A Calderón Villalobos; Steffen Abel
Journal:  Trends Plant Sci       Date:  2015-12-01       Impact factor: 18.313

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses.

Authors:  Sumita Kumari; Prabhjeet Singh; Sneh L Singla-Pareek; Ashwani Pareek
Journal:  Mol Biotechnol       Date:  2009-02-12       Impact factor: 2.695

8.  Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed.

Authors:  Song-Lin Ruan; Hua-Sheng Ma; Shi-Heng Wang; Ya-Ping Fu; Ya Xin; Wen-Zhen Liu; Fang Wang; Jian-Xin Tong; Shu-Zhen Wang; Hui-Zhe Chen
Journal:  BMC Plant Biol       Date:  2011-02-16       Impact factor: 4.215

Review 9.  The cyclophilins.

Authors:  Ping Wang; Joseph Heitman
Journal:  Genome Biol       Date:  2005-06-27       Impact factor: 13.583

Review 10.  Cyclophilins: proteins in search of function.

Authors:  Sumita Kumari; Suchismita Roy; Prabhjeet Singh; Sneh L Singla-Pareek; Ashwani Pareek
Journal:  Plant Signal Behav       Date:  2012-11-03
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  2 in total

1.  Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.

Authors:  Lucila Andrea Acevedo; Jeahoo Kwon; Linda K Nicholson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-29       Impact factor: 11.205

2.  Tuning a timing device that regulates lateral root development in rice.

Authors:  Lucila Andrea Acevedo; Nathan E Korson; Justin M Williams; Linda K Nicholson
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

  2 in total

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