Literature DB >> 29346916

Construction of and efficient sampling from the simplicial configuration model.

Jean-Gabriel Young1, Giovanni Petri2, Francesco Vaccarino2,3, Alice Patania2,3.   

Abstract

Simplicial complexes are now a popular alternative to networks when it comes to describing the structure of complex systems, primarily because they encode multinode interactions explicitly. With this new description comes the need for principled null models that allow for easy comparison with empirical data. We propose a natural candidate, the simplicial configuration model. The core of our contribution is an efficient and uniform Markov chain Monte Carlo sampler for this model. We demonstrate its usefulness in a short case study by investigating the topology of three real systems and their randomized counterparts (using their Betti numbers). For two out of three systems, the model allows us to reject the hypothesis that there is no organization beyond the local scale.

Year:  2017        PMID: 29346916     DOI: 10.1103/PhysRevE.96.032312

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  8 in total

1.  Spike Train Coactivity Encodes Learned Natural Stimulus Invariances in Songbird Auditory Cortex.

Authors:  Brad Theilman; Krista Perks; Timothy Q Gentner
Journal:  J Neurosci       Date:  2020-11-11       Impact factor: 6.167

2.  Co-occurrence simplicial complexes in mathematics: identifying the holes of knowledge.

Authors:  Vsevolod Salnikov; Daniele Cassese; Renaud Lambiotte; Nick S Jones
Journal:  Appl Netw Sci       Date:  2018-08-28

3.  Simplicial models of social contagion.

Authors:  Iacopo Iacopini; Giovanni Petri; Alain Barrat; Vito Latora
Journal:  Nat Commun       Date:  2019-06-06       Impact factor: 14.919

4.  Generating dynamical neuroimaging spatiotemporal representations (DyNeuSR) using topological data analysis.

Authors:  Caleb Geniesse; Olaf Sporns; Giovanni Petri; Manish Saggar
Journal:  Netw Neurosci       Date:  2019-07-01

5.  A roadmap for the computation of persistent homology.

Authors:  Nina Otter; Mason A Porter; Ulrike Tillmann; Peter Grindrod; Heather A Harrington
Journal:  EPJ Data Sci       Date:  2017-08-09       Impact factor: 3.184

6.  The effect of heterogeneity on hypergraph contagion models.

Authors:  Nicholas W Landry; Juan G Restrepo
Journal:  Chaos       Date:  2020-10       Impact factor: 3.642

Review 7.  Dynamics on higher-order networks: a review.

Authors:  Soumen Majhi; Matjaž Perc; Dibakar Ghosh
Journal:  J R Soc Interface       Date:  2022-03-23       Impact factor: 4.118

8.  Spectral estimation for detecting low-dimensional structure in networks using arbitrary null models.

Authors:  Mark D Humphries; Javier A Caballero; Mat Evans; Silvia Maggi; Abhinav Singh
Journal:  PLoS One       Date:  2021-07-02       Impact factor: 3.240

  8 in total

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