| Literature DB >> 29340520 |
Y H Li1,2, Y Yang1, Y T Yan1, L W Xu1, H Y Ma1, Y X Shao3, C J Cao3, X Wu1, M J Qi1, Y Y Wu1, R Chen1, Y Hong1, X H Tan1, L Yang1,2.
Abstract
Occupational noise-induced hearing loss (ONIHL) is a prevalent occupational disorder that impairs auditory function in workers exposed to prolonged noise. However, serum microRNA expression in ONIHL subjects has not yet been studied. We aimed to compare the serum microRNA expression profiles in male workers of ONIHL subjects and controls. MicroRNA microarray analysis revealed that four serum microRNAs were differentially expressed between controls (n=3) and ONIHL subjects (n=3). Among these microRNAs, three were upregulated (hsa-miR-3162-5p, hsa-miR-4484, hsa-miR-1229-5p) and one was downregulated (hsa-miR-4652-3p) in the ONIHL group (fold change >1.5 and Pbon value <0.05). Real time quantitative PCR was conducted for validation of the microRNA expression. Significantly increased serum levels of miR-1229-5p were found in ONIHL subjects compared to controls (n=10 for each group; P<0.05). A total of 659 (27.0%) genes were predicted as the target genes of miR-1229-5p. These genes were involved in various pathways, such as mitogen-activated protein kinase (MAPK) signaling pathway. Overexpression of miR-1229-5p dramatically inhibited the luciferase activity of 3' UTR segment of MAPK1 (P<0.01). Compared to the negative control, HEK293T cells expressing miR-1229-5p mimics showed a significant decline in mRNA levels of MAPK1 (P<0.05). This preliminary study indicated that serum miR-1229-5p was significantly elevated in ONIHL subjects. Increased miR-1229-5p may participate in the pathogenesis of ONIHL through repressing MAPK1 signaling.Entities:
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Year: 2018 PMID: 29340520 PMCID: PMC5769754 DOI: 10.1590/1414-431X20176426
Source DB: PubMed Journal: Braz J Med Biol Res ISSN: 0100-879X Impact factor: 2.590
Demographic and clinical characteristics of subjects used for microarray analysis and PCR experiments.
| Microarray analysis | PCR analysis | |||||
|---|---|---|---|---|---|---|
| Control | ONIHL | P value | Control | ONIHL | P value | |
| Number of subjects | 3 | 3 | 7 | 7 | ||
| Gender (male/female) | 3/0 | 3/0 | 7/0 | 7/0 | ||
| Age (years) | 36.7±6.4 | 43.3±0.6 | 0.081 | 41.6±1.1 | 42.4±1.3 | 0.208 |
| Average level of binaural high-frequency hearing threshold (dB) | 25.0±0.0 | 60.3±0.6 |
| 25.0±0.0 | 63.3±2.4 |
|
| Weighted value of monaural threshold of the better ear (dB) | 25.0±0.0 | 30.7±1.3 |
| 25.0±0.0 | 31.9±1.3 |
|
| Working duration (h/day) | 8.5±0.9 | 8.3±0.6 | 0.795 | 9.4±1.7 | 9.0±1.5 | 0.607 |
PCR: polymerase chain reaction; ONIHL: occupational noise-induced hearing loss. Data are reported as number of cases or means±SD. P values compared to control are reported (t-test).
Figure 1.MicroRNA profile analyzed by microarray. A, microRNA profile. Among 2549 tested microRNAs, 2362 (92.7%) were not expressed in either group; 147 (5.8%) microRNAs were commonly expressed in both groups; while 34 (1.3%) and 6 (0.2%) microRNAs were found to be exclusively expressed in controls and ONIHL subjects, respectively. B, Volcano plots representing the differentially expressed microRNAs between occupational noise-induced hearing loss (ONIHL) and control subjects. The X-axis represents the log2-transformed fold change compared with controls; the Y-axis represents –log10 (P values) obtained from the Student's t-test. Dots on the right side of the green line represent the upregulated microRNAs with a fold change >1.5, and those located on the left side of the green line represent downregulated microRNAs with fold change >1.5 in ONIHL subjects when compared to those of controls. P value threshold was set at 0.05 (orange line). Those differentially expressed microRNAs, with a fold change >1.5 and P<0.05, are indicated in red.
Differentially expressed serum microRNAs between ONIHL patients and controls.
| Fold change | P/Pbon | |
|---|---|---|
| Upregulated microRNAs | ||
| hsa-miR-3162-5p | 21.89 |
|
| hsa-miR-4484 | 9.51 |
|
| hsa-miR-1229-5p | 1.91 |
|
| Downregulated microRNAs | ||
| hsa-miR-6752-3p | 0.25 | 0.039/0.276 |
| hsa-miR-6824-3p | 0.25 | 0.039/0.276 |
| hsa-miR-4769-3p | 0.18 | 0.042/0.296 |
| hsa-miR-4652-3p | 0.14 |
|
ONIHL: occupational noise-induced hearing loss. Pbon value was calculated by the Bonferroni correction using the following equation: Pbon value = P value × 7 (7 microRNAs).
Figure 2.The differentially expressed miR-3162-5p (A), miR-4484 (B), and miR-1229-5p (C, D) in the blood serum of occupational noise-induced hearing loss (ONIHL) patients and controls were verified using real time qPCR. A–C, Blood serum samples were derived from those used for microarray analysis (n=3 for each group). D, Blood serum samples were derived from subjects that did not receive microarray analysis (n=7 for each group). Data are reported as means±SD. *P<0.05 compared with control (t-test).
Gene ontology analysis of the predicted target genes of hsa-miR-1229-5p.
| Term | Count | Percentage (%) | P value | Benjamini |
|---|---|---|---|---|
| Biological processes | 1795 | 73.7 | ||
| Cellular process | 1505 | 61.8 | P<0.05 | P<0.05 |
| Metabolic process | 1058 | 43.4 | P<0.05 | P=0.56 |
| Biosynthetic process | 504 | 20.7 | P<0.05 | P=0.66 |
| Localization | 456 | 18.7 | P<0.05 | P=0.30 |
| Developmental process | 450 | 18.5 | P<0.05 | P=0.67 |
| Cellular components | 1632 | 67.0 | ||
| Plasma membrane | 530 | 21.7 | P<0.05 | P=0.29 |
| Non-membrane-bounded organelle | 353 | 14.5 | P=0.093 | P=0.73 |
| Nuclear lumen | 203 | 8.3 | P=0.088 | P=0.73 |
| Cell fraction | 162 | 6.6 | P<0.05 | P=0.48 |
| Endoplasmic reticulum | 155 | 6.4 | P<0.05 | P=0.18 |
| Molecular functions | 1732 | 71.1 | ||
| Ion binding | 631 | 25.9 | P<0.05 | P=0.27 |
| Nucleotide binding | 351 | 14.4 | P<0.05 | P=0.10 |
| ATP binding | 223 | 9.2 | P<0.05 | P=0.73 |
| Transcription regulator activity | 221 | 9.1 | P=0.075 | P=0.88 |
| Protein kinase activity | 95 | 3.9 | P=0.06 | P=0.86 |
Gene Ontology analysis contains three functional classes, namely biological processes, cellular components and molecular functions. The number or percentage of genes within categories ranked in the top five of each class is listed. Benjamini: Benjamini-Hochberg corrected P value.
Figure 3.Pie chart of the predicted target genes of miR-1229-5p involved in various pathways. Data were analyzed by KEGG pathways using DAVID tool.
Figure 4.A, Sequence alignment of miR-1229-5p and its target sites in 3′ UTR segments of human MAPK1 gene. B, Relative luciferase activity. Cells were co-transfected with 3′ UTR luciferase plasmid, microRNA plasmid and Renilla plasmid. Luciferase activity was measured using Dual-Luciferase® Reporter Assay System 48 h after transfection. The relative luciferase activity was calculated against the negative control. *P<0.05, **P<0.01 (t-test). C, Cells were transfected with miR-1229-5p mimics using Lipofectamine™ 2000 transfection reagent. Cells exposed to transfection reagent or not transfected were used as negative control and blank control, respectively. Forty-eight hours after transfection, the mRNA level of MAPK1 was examined using real time qPCR. The mRNA expression of blank control was set as 1 and the relative fold changes of negative control and miR-1229-5p mimics are reported. Data are reported as means±SD. *P<0.05 compared with negative control (t-test).