Literature DB >> 29337643

Models for predicting the evolution of influenza to inform vaccine strain selection.

Joseph K Agor1, Osman Y Özaltın2.   

Abstract

Influenza vaccine composition is reviewed before every flu season because influenza viruses constantly evolve through antigenic changes. To inform vaccine updates, laboratories that contribute to the World Health Organization Global Influenza Surveillance and Response System monitor the antigenic phenotypes of circulating viruses all year round. Vaccine strains are selected in anticipation of the upcoming influenza season to allow adequate time for production. A mismatch between vaccine strains and predominant strains in the flu season can significantly reduce vaccine effectiveness. Models for predicting the evolution of influenza based on the relationship of genetic mutations and antigenic characteristics of circulating viruses may inform vaccine strain selection decisions. We review the literature on state-of-the-art tools and prediction methodologies utilized in modeling the evolution of influenza to inform vaccine strain selection. We then discuss areas that are open for improvement and need further research.

Keywords:  antigenic difference; influenza; influenza evolution; influenza vaccine; prediction models; strain selection

Mesh:

Substances:

Year:  2018        PMID: 29337643      PMCID: PMC5861780          DOI: 10.1080/21645515.2017.1423152

Source DB:  PubMed          Journal:  Hum Vaccin Immunother        ISSN: 2164-5515            Impact factor:   3.452


  37 in total

1.  RadCon: phylogenetic tree comparison and consensus.

Authors:  J L Thorley; R D Page
Journal:  Bioinformatics       Date:  2000-05       Impact factor: 6.937

2.  CONSEL: for assessing the confidence of phylogenetic tree selection.

Authors:  H Shimodaira; M Hasegawa
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

3.  Cross-reactive H1N1 antibody responses to a live attenuated influenza vaccine in children: implication for selection of vaccine strains.

Authors:  Min-Shi Lee; Chin-Fen Yang
Journal:  J Infect Dis       Date:  2003-10-16       Impact factor: 5.226

Review 4.  Structural basis of immune recognition of influenza virus hemagglutinin.

Authors:  I A Wilson; N J Cox
Journal:  Annu Rev Immunol       Date:  1990       Impact factor: 28.527

5.  Computational prediction of vaccine strains for human influenza A (H3N2) viruses.

Authors:  L Steinbrück; T R Klingen; A C McHardy
Journal:  J Virol       Date:  2014-08-13       Impact factor: 5.103

Review 6.  Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses.

Authors:  Colin A Russell; Terry C Jones; Ian G Barr; Nancy J Cox; Rebecca J Garten; Vicky Gregory; Ian D Gust; Alan W Hampson; Alan J Hay; Aeron C Hurt; Jan C de Jong; Anne Kelso; Alexander I Klimov; Tsutomu Kageyama; Naomi Komadina; Alan S Lapedes; Yi P Lin; Ana Mosterin; Masatsugu Obuchi; Takato Odagiri; Albert D M E Osterhaus; Guus F Rimmelzwaan; Michael W Shaw; Eugene Skepner; Klaus Stohr; Masato Tashiro; Ron A M Fouchier; Derek J Smith
Journal:  Vaccine       Date:  2008-09-12       Impact factor: 3.641

7.  Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus.

Authors:  Yu-Chieh Liao; Min-Shi Lee; Chin-Yu Ko; Chao A Hsiung
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Authors:  Lars Steinbrück; Alice Carolyn McHardy
Journal:  Nucleic Acids Res       Date:  2010-10-18       Impact factor: 16.971

Review 9.  The ferret as a model organism to study influenza A virus infection.

Authors:  Jessica A Belser; Jacqueline M Katz; Terrence M Tumpey
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10.  H3N2 Mismatch of 2014-15 Northern Hemisphere Influenza Vaccines and Head-to-head Comparison between Human and Ferret Antisera derived Antigenic Maps.

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  14 in total

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Journal:  Hum Vaccin Immunother       Date:  2018-03-04       Impact factor: 3.452

2.  Forecasting type-specific seasonal influenza after 26 weeks in the United States using influenza activities in other countries.

Authors:  Soo Beom Choi; Juhyeon Kim; Insung Ahn
Journal:  PLoS One       Date:  2019-11-25       Impact factor: 3.240

3.  Next generation methodology for updating HA vaccines against emerging human seasonal influenza A(H3N2) viruses.

Authors:  James D Allen; Ted M Ross
Journal:  Sci Rep       Date:  2021-03-02       Impact factor: 4.379

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Review 5.  Influenza Virus-Host Co-evolution. A Predator-Prey Relationship?

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6.  A pooled genome-wide screening strategy to identify and rank influenza host restriction factors in cell-based vaccine production platforms.

Authors:  David M Sharon; Sean Nesdoly; Hsin J Yang; Jean-François Gélinas; Yu Xia; Sven Ansorge; Amine A Kamen
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7.  Convolutional Neural Network Based Approach to in Silico Non-Anticipating Prediction of Antigenic Distance for Influenza Virus.

Authors:  Majid Forghani; Michael Khachay
Journal:  Viruses       Date:  2020-09-12       Impact factor: 5.048

8.  Clinically Relevant Influenza Virus Evolution Reconstituted in a Human Lung Airway-on-a-Chip.

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9.  Universal Live-Attenuated Influenza Vaccine Candidates Expressing Multiple M2e Epitopes Protect Ferrets against a High-Dose Heterologous Virus Challenge.

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Authors:  Jidang Chen; Jiehuang Wang; Jipei Zhang; Hinh Ly
Journal:  Front Immunol       Date:  2021-07-13       Impact factor: 7.561

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