Literature DB >> 29335644

Runs of homozygosity: windows into population history and trait architecture.

Francisco C Ceballos1,2, Peter K Joshi3, David W Clark3, Michèle Ramsay1,4, James F Wilson2,3.   

Abstract

Long runs of homozygosity (ROH) arise when identical haplotypes are inherited from each parent and thus a long tract of genotypes is homozygous. Cousin marriage or inbreeding gives rise to such autozygosity; however, genome-wide data reveal that ROH are universally common in human genomes even among outbred individuals. The number and length of ROH reflect individual demographic history, while the homozygosity burden can be used to investigate the genetic architecture of complex disease. We discuss how to identify ROH in genome-wide microarray and sequence data, their distribution in human populations and their application to the understanding of inbreeding depression and disease risk.

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Year:  2018        PMID: 29335644     DOI: 10.1038/nrg.2017.109

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  129 in total

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Journal:  Hum Mutat       Date:  2006-11       Impact factor: 4.878

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10.  The role of inbreeding in the extinction of a European royal dynasty.

Authors:  Gonzalo Alvarez; Francisco C Ceballos; Celsa Quinteiro
Journal:  PLoS One       Date:  2009-04-15       Impact factor: 3.240

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  134 in total

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Review 5.  Alternative Applications of Genotyping Array Data Using Multivariant Methods.

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6.  Patterns of Genetic Coding Variation in a Native American Population before and after European Contact.

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7.  Genomic diversity revealed by whole-genome sequencing in three Danish commercial pig breeds.

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8.  Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

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9.  Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data.

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Review 10.  Next-generation sequencing in Charcot-Marie-Tooth disease: opportunities and challenges.

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