Literature DB >> 29335549

Reconstructing an African haploid genome from the 18th century.

Anuradha Jagadeesan1,2, Ellen D Gunnarsdóttir1, S Sunna Ebenesersdóttir1,2, Valdis B Guðmundsdóttir1,2, Elisabet Linda Thordardottir1, Margrét S Einarsdóttir1,2, Hákon Jónsson1, Jean-Michel Dugoujon3, Cesar Fortes-Lima3, Florence Migot-Nabias4,5, Achille Massougbodji6,7, Gil Bellis8, Luisa Pereira9,10,11, Gísli Másson1, Augustine Kong1, Kári Stefánsson12,13, Agnar Helgason14,15.   

Abstract

A genome is a mosaic of chromosome fragments from ancestors who existed some arbitrary number of generations earlier. Here, we reconstruct the genome of Hans Jonatan (HJ), born in the Caribbean in 1784 to an enslaved African mother and European father. HJ migrated to Iceland in 1802, married and had two children. We genotyped 182 of his 788 descendants using single-nucleotide polymorphism (SNP) chips and whole-genome sequenced (WGS) 20 of them. Using these data, we reconstructed 38% of HJ's maternal genome and inferred that his mother was from the region spanned by Benin, Nigeria and Cameroon.

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Year:  2018        PMID: 29335549     DOI: 10.1038/s41588-017-0031-6

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  2 in total

1.  Crowdsourced genealogies and genomes.

Authors:  Alexandre A Lussier; Alon Keinan
Journal:  Science       Date:  2018-04-13       Impact factor: 47.728

2.  Ancestral haplotype reconstruction in endogamous populations using identity-by-descent.

Authors:  Kelly Finke; Michael Kourakos; Gabriela Brown; Huyen Trang Dang; Shi Jie Samuel Tan; Yuval B Simons; Shweta Ramdas; Alejandro A Schäffer; Rachel L Kember; Maja Bućan; Sara Mathieson
Journal:  PLoS Comput Biol       Date:  2021-02-26       Impact factor: 4.475

  2 in total

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