Literature DB >> 29335548

Paternal easiRNAs regulate parental genome dosage in Arabidopsis.

German Martinez1,2, Philip Wolff1,2,3, Zhenxing Wang1,2, Jordi Moreno-Romero1,2,4, Juan Santos-González1,2, Lei Liu Conze1,2,5, Christopher DeFraia6,7, R Keith Slotkin5, Claudia Köhler8,9.   

Abstract

The regulation of parental genome dosage is of fundamental importance in animals and plants, as exemplified by X-chromosome inactivation and dosage compensation. The 'triploid block' is a classic example of dosage regulation in plants that establishes a reproductive barrier between species differing in chromosome number1,2. This barrier acts in the embryo-nourishing endosperm tissue and induces the abortion of hybrid seeds through a yet unknown mechanism 3 . Here we show that depletion of paternal epigenetically activated small interfering RNAs (easiRNAs) bypasses the triploid block in response to increased paternal ploidy in Arabidopsis thaliana. Paternal loss of the plant-specific RNA polymerase IV suppressed easiRNA formation and rescued triploid seeds by restoring small-RNA-directed DNA methylation at transposable elements (TEs), correlating with reduced expression of paternally expressed imprinted genes (PEGs). Our data suggest that easiRNAs form a quantitative signal for paternal chromosome number and that their balanced dosage is required for post-fertilization genome stability and seed viability.

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Year:  2018        PMID: 29335548     DOI: 10.1038/s41588-017-0033-4

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  40 in total

1.  Polymerase IV Plays a Crucial Role in Pollen Development in Capsella.

Authors:  Zhenxing Wang; Nicolas Butel; Juan Santos-González; Filipe Borges; Jun Yi; Robert A Martienssen; German Martinez; Claudia Köhler
Journal:  Plant Cell       Date:  2020-01-27       Impact factor: 11.277

2.  Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes.

Authors:  Kaushik Panda; Andrea D McCue; R Keith Slotkin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

Review 3.  PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction.

Authors:  Yuanlong Liu; Chong Teng; Rui Xia; Blake C Meyers
Journal:  Plant Cell       Date:  2020-08-18       Impact factor: 11.277

4.  Exploration of miRNAs and target genes of cytoplasmic male sterility line in cotton during flower bud development.

Authors:  Hushuai Nie; Yumei Wang; Ying Su; Jinping Hua
Journal:  Funct Integr Genomics       Date:  2018-04-07       Impact factor: 3.410

Review 5.  Plant Noncoding RNAs: Hidden Players in Development and Stress Responses.

Authors:  Yu Yu; Yuchan Zhang; Xuemei Chen; Yueqin Chen
Journal:  Annu Rev Cell Dev Biol       Date:  2019-08-12       Impact factor: 13.827

6.  Maternal small RNAs mediate spatial-temporal regulation of gene expression, imprinting, and seed development in Arabidopsis.

Authors:  Ryan C Kirkbride; Jie Lu; Changqing Zhang; Rebecca A Mosher; David C Baulcombe; Z Jeffrey Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-28       Impact factor: 11.205

7.  Paternally Acting Canonical RNA-Directed DNA Methylation Pathway Genes Sensitize Arabidopsis Endosperm to Paternal Genome Dosage.

Authors:  Prasad R V Satyaki; Mary Gehring
Journal:  Plant Cell       Date:  2019-05-07       Impact factor: 11.277

8.  Abundant expression of maternal siRNAs is a conserved feature of seed development.

Authors:  Jeffrey W Grover; Diane Burgess; Timmy Kendall; Abdul Baten; Suresh Pokhrel; Graham J King; Blake C Meyers; Michael Freeling; Rebecca A Mosher
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-15       Impact factor: 11.205

9.  Transgenerational effect of mutants in the RNA-directed DNA methylation pathway on the triploid block in Arabidopsis.

Authors:  Zhenxing Wang; Nicolas Butel; Juan Santos-González; Lauriane Simon; Cecilia Wärdig; Claudia Köhler
Journal:  Genome Biol       Date:  2021-05-06       Impact factor: 13.583

10.  Embryo CHH hypermethylation is mediated by RdDM and is autonomously directed in Brassica rapa.

Authors:  Tania Chakraborty; Timmy Kendall; Jeffrey W Grover; Rebecca A Mosher
Journal:  Genome Biol       Date:  2021-05-06       Impact factor: 13.583

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