| Literature DB >> 29330410 |
Alexandra Bernegger1, Klemens Kienesberger1, Laura Carlberg1, Patrick Swoboda1, Birgit Ludwig1, Romina Koller1, Michelle Inaner1, Melanie Zotter1, Nestor Kapusta2, Martin Aigner3, Helmuth Haslacher4, Siegfried Kasper1, Alexandra Schosser5,6.
Abstract
The inconsistent findings on the association between COMT (catecholamine-O-methyl-transferase) and suicidal behaviour gave reason to choose a clear phenotype description of suicidal behaviour and take childhood maltreatment as environmental factor into account. The aim of this candidate-gene-association study was to eliminate heterogeneity within the sample by only recruiting affective disorder patients and find associations between COMT polymorphisms and defined suicidal phenotypes. In a sample of 258 affective disorder patients a detailed clinical assessment (e.g. CTQ, SCAN, HAMD, SBQ-R, VI-SURIAS, LPC) was performed. DNA of peripheral blood samples was genotyped using TaqMan® SNP Genotyping Assays. We observed that the haplotype GAT of rs737865, rs6269, rs4633 is significantly associated with suicide attempt (p = 0.003 [pcorr = 0.021]), and that there is a tendency towards self-harming behaviour (p = 0.02 [pcorr = 0.08]) and also NSSI (p = 0.03 [pcorr = 0.08]), though the p values did not resist multiple testing correction. The same effect we observed with the 4-marker slide window haplotype, GATA of rs737865, rs6269, rs4633, rs4680 (p = 0.009 [pcorr = 0.045]). The findings support an association between the COMT gene and suicidal behaviour phenotypes with and without childhood maltreatment as environmental factor.Entities:
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Year: 2018 PMID: 29330410 PMCID: PMC5766555 DOI: 10.1038/s41598-017-19040-z
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
COMT SNPs (single nucleotide polymorphisms) on suicidal phenotypes. Single marker association analyses (SNPs: rs4633, rs4680, rs737865, rs6269, rs165599). Significant p-values in bold. False discovery rate (FDR) p-values after multiple testing correction in brackets. [HW = Hardy-Weinberg equilibrium, COMT = Catechol-O-methyltransferase, NSSI = non-suicidal self-injury, total = total sample].
| HW p-value: 0,45 | total | female | male | |||
|---|---|---|---|---|---|---|
| χ2 | p-value | χ2 | p-value | χ2 | p-value | |
| rs4633 | ||||||
| transient thought | 1.532 | 0.465 | 0.041 | 0.98 | 2.044 | 0.36 |
| concrete thought | 1.1 | 0.577 | 1.881 | 0.39 | 1.346 | 0.51 |
| NSSI | 3.785 | 0.151 | 3.09 | 0.213 | 0.679 | 0.712 |
| self-harm | 2.519 | 0.284 | 5.15 | 0.076 | 0.256 | 0.88 |
| suicide attempt | 0.929 | 0.628 | 0.714 | 0.7 | 0.169 | 0.919 |
| rs4680 | ||||||
| transient thought | 1.31 | 0.519 | 0.041 | 0.98 | 1.575 | 0.455 |
| concrete thought | 1.213 | 0.545 | 1.881 | 0.39 | 1.777 | 0.411 |
| NSSI | 4.047 | 0.132 | 3.09 | 0.213 | 1.863 | 0.394 |
| self-harm | 1.88 | 0.391 | 5.15 | 0.076 | 0.893 | 0.64 |
| suicide attempt | 0.502 | 0.778 | 0.714 | 0.7 | 0.015 | 0.993 |
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| rs737865 | ||||||
| transient thought | 0.248 | 0.883 | 0.357 | 0.836 | 0.113 | 0.945 |
| concrete thought | 5.17 | 0.075 | 2.687 | 0.26 | 2.639 | 0.267 |
| NSSI | 1.422 | 0.491 | 2.956 | 0.228 | 0.267 | 0.875 |
| self-harm | 0.431 | 0.806 | 2.187 | 0.335 | 4.72 | 0.94 |
| suicide attempt | 6.08 | 0.048 | 1.12 | 0.57 | 10.1 |
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| rs6269 | ||||||
| transient thought | 0.965 | 0.617 | 1.034 | 0.596 | 2.391 | 0.302 |
| concrete thought | 8.085 | 0.018 [0.09] | 5.549 | 0.062 | 2.943 | 0.23 |
| NSSI | 2.635 | 0.268 | 1.948 | 0.378 | 0.392 | 0.822 |
| self-harm | 1.986 | 0.37 | 2.218 | 0.33 | 1.599 | 0.45 |
| suicide attempt | 2.383 | 0.304 | 0.311 | 0.856 | 3.784 | 0.151 |
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| rs165599 | ||||||
| transient thought | 2.296 | 0.317 | 0.438 | 0.803 | 5.625 | 0.06 |
| concrete thought | 3.018 | 0.221 | 0.08 | 0.961 | 7.722 | 0.021 [0.1] |
| non-suicidal self-mutilation | 3.256 | 0.196 | 0.955 | 0.622 | 2.265 | 0.322 |
| self-harm | 1.881 | 0.39 | 3.21 | 0.201 | 0.118 | 0.943 |
| suicide attempt | 1.027 | 0.598 | 0.619 | 0.734 | 2.277 | 0.32 |
Logistic regression - risk assessment for suicidal behaviour (attempted suicide, self-harm behaviour, NSSI = non-suicidal self-injury). Significant p-values in bold, after FDR correction in brackets. (SNP = single nucleotide polymorphism, L-R x2 = likelihood-ratio chi-squared).
| SNP | Gene effect | Childhood trauma effect | GxE interaction | |||
|---|---|---|---|---|---|---|
| L-R χ2 | p-value | L-R χ2 | p-value | L-R χ2 | p-value | |
| attempted suicide | ||||||
| rs4680 | 0.002 | 0.961 | 16.5 |
| 3.46 | 0.89 |
| rs4633 | 0.001 | 0.995 | 16.48 |
| 4.31 | 0.9 |
| rs737865 | 5.05 |
| 13.64 |
| 7.21 | 0.31 |
| rs165599 | 0.11 | 0.74 | 16.35 |
| 7.81 | 0.62 |
| rs6269 | 0.297 | 0.586 | 16.58 |
| No valid regression model–omnibus p > 0.05 | |
| self-harm behaviour | ||||||
| rs4680 | 1.488 | 0.22 | 14.47 |
| 8.44 | 0.66 |
| rs4633 | 1.58 | 0.2 | 14.26 |
| 9.06 | 0.6 |
| rs737865 | 0.12 | 0.72 | 14.22 |
| 5.18 | 0.091 |
| rs165599 | 1.55 | 0.68 | 15.74 |
| 9.664 | 0.73 |
| rs6269 | 0.17 | 0.67 | 14.08 |
| 9.6 | 0.055 |
| NSSI | ||||||
| rs4680 | 2.1 | 0.147 | 9.7 |
| 9.07 | 0.25 |
| rs4633 | 2.4 | 0.121 | 9.46 |
| 10.24 | 0.19 |
| rs737865 | 1.54 | 0.21 | 10.27 |
| 9.66 | 0.13 |
| rs165599 | 4.17 | 0.041 | 10.82 |
| 13.13 | 0.44 |
| rs6269 | 2.13 | 0.14 | 9.44 |
| 11.46 | 0.058 |
Haplotypic association analyses with suicidal phenotypes as dependent variables (suicide attempt, self-harm, NSSI = non-suicidal self-injury). Haplotypes: 3- and 4-marker slide windows of COMT SNPs rs 737865, rs6269, rs4633, rs9332377, rs165599. Significant p-values in bold. False discovery rate (FDR) p-values after multiple testing correction in brackets.
| Haplotypes: 3-marker slide windows | 4-marker slide windows | ||||||
|---|---|---|---|---|---|---|---|
| a) suicide attempt | |||||||
| rs737865 | G | G | |||||
| rs6269 | A | A | A | A | |||
| rs4633 | T | C | C | T | C | C | |
| rs4680 | G | G | G | A | G | G | |
| rs9332377 | C | C | C | C | |||
| rs165599 | G | G | |||||
| Global p | 0.031 [0.124] | 0.37 | 0.4 | 0.62 | 0.05 [0.22] | 0.47 | 0.54 |
| Individual p |
| 0.34 | 0.18 | 0.31 |
| 0.23 | 0.24 |
| Frequency cases/contr | 0.025/0.08 | 0.08/0.05 | 0.35/0.28 | 0.11/0.08 | 0.02/0.07 | 0.08/0.05 | 0.11/0.08 |
| b) self-harm | |||||||
| rs737865 | G | G | |||||
| rs6269 | A | A | A | A | |||
| rs4633 | T | T | T | T | T | T | |
| rs4680 | A | A | A | A | A | A | |
| rs9332377 | T | C | C | C | |||
| rs165599 | A | A | |||||
| Global p | 0.1 | 0.25 | 0.15 | 0.34 | 0.18 | 0.24 | 0.29 |
| Individual p | 0.02 [0.08] | 0.11 | 0.11 | 0.11 | 0.052 | 0.15 | 0.1 |
| Frequency cases/contr | 0.02/0.09 | 0.48/0.56 | 0/0.01 | 0.44/0.52 | 0.02/0.08 | 0.48/0.55 | 0.44/0.52 |
| c) NSSI | |||||||
| rs737865 | G | G | |||||
| rs6269 | A | A | G | G | |||
| rs4633 | T | T | C | C | C | C | |
| rs4680 | G | G | C | G | G | G | |
| rs9332377 | T | T | T | T | |||
| rs165599 | G | G | |||||
| Global p | 0.1 | 0.11 | 0.02 [0.92] | 0.1 | 0.08 | 0.03 | 0.04 |
| Individual p | 0.03 [0.08] | 0.04 [0.08] | 0.03 [0.08] | 0.03 [0.08] | 0.06 | 0.03 [0.1] | 0.03 [0.1] |
| Frequency cases/contr | 0.03/0.09 | 0/0.01 | 0.17/0.08 | 0.17/0.08 | 0.27/0.17 | 0.17/0.08 | 0.17/0.08 |
Logistic regression; gene-environment-interaction and predicted mean suicide risk. Haplotypes GAT and AAT of rs737865, rs6269, rs4633 and GATA of rs737865, rs6269, rs4633, rs4680. Significant p-values in bold. (GxE = gene-environment, L-R χ2 = Likelihood-ratio chi-squared).
| Haplotype | Haplotype effect | sexual abuse effect | GxE interaction | model | ||||
|---|---|---|---|---|---|---|---|---|
| L-R χ2 | p value | L-R χ2 | p value | L-R χ2 | p-value | omnibus χ2 | p-value | |
| GAT | 5.6 | 0.018 | 15.6 |
| 2.5 | 0.114 | 24.8 |
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| AAT | 0.3 | 0.55 | 5.2 |
| 0.34 | 0.54 | 19.4 |
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| GATA | 5.6 | 0.018 | 15.6 |
| 2.5 | 0.114 | 24.8 |
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