Literature DB >> 29328909

Single-Cell Genomics: A Stepping Stone for Future Immunology Discoveries.

Amir Giladi1, Ido Amit2.   

Abstract

The immunology field has invested great efforts and ingenuity to characterize the various immune cell types and elucidate their functions. However, accumulating evidence indicates that current technologies and classification schemes are limited in their ability to account for the functional heterogeneity of immune processes. Single-cell genomics hold the potential to revolutionize the way we characterize complex immune cell assemblies and study their spatial organization, dynamics, clonal distribution, pathways, function, and crosstalks. In this Perspective, we consider recent and forthcoming technological and analytical advances in single-cell genomics and the potential impact of those advances on the future of immunology research and immunotherapy.
Copyright © 2017 Elsevier Inc. All rights reserved.

Mesh:

Year:  2018        PMID: 29328909     DOI: 10.1016/j.cell.2017.11.011

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  52 in total

1.  Pathogenicity of acquired immunity in human diseases.

Authors:  Kiyoshi Hirahara
Journal:  Semin Immunopathol       Date:  2019-05-07       Impact factor: 9.623

2.  Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity.

Authors:  Peter van Galen; Volker Hovestadt; Marc H Wadsworth Ii; Travis K Hughes; Gabriel K Griffin; Sofia Battaglia; Julia A Verga; Jason Stephansky; Timothy J Pastika; Jennifer Lombardi Story; Geraldine S Pinkus; Olga Pozdnyakova; Ilene Galinsky; Richard M Stone; Timothy A Graubert; Alex K Shalek; Jon C Aster; Andrew A Lane; Bradley E Bernstein
Journal:  Cell       Date:  2019-02-28       Impact factor: 41.582

3.  Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury.

Authors:  Elke Ydens; Lukas Amann; Marco Prinz; Sophie Janssens; Martin Guilliams; Bob Asselbergh; Charlotte L Scott; Liesbet Martens; Dorine Sichien; Omar Mossad; Thomas Blank; Sofie De Prijck; Donovan Low; Takahiro Masuda; Yvan Saeys; Vincent Timmerman; Ralf Stumm; Florent Ginhoux
Journal:  Nat Neurosci       Date:  2020-04-13       Impact factor: 24.884

4.  Single-Cell Analysis of CD4 T Cells in Type 1 Diabetes: From Mouse to Man, How to Perform Mechanistic Studies.

Authors:  Siddhartha Sharma; Jeremy Pettus; Michael Gottschalk; Brian Abe; Peter Gottlieb; Luc Teyton
Journal:  Diabetes       Date:  2019-10       Impact factor: 9.461

5.  Integrative Genome-Wide Analysis of Long Noncoding RNAs in Diverse Immune Cell Types of Melanoma Patients.

Authors:  Lei Wang; Sara J Felts; Virginia P Van Keulen; Adam D Scheid; Matthew S Block; Svetomir N Markovic; Larry R Pease; Yuji Zhang
Journal:  Cancer Res       Date:  2018-06-12       Impact factor: 12.701

Review 6.  Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges.

Authors:  Siddhartha Sharma; Louis Gioia; Brian Abe; Marie Holt; Anne Costanzo; Lisa Kain; Andrew Su; Luc Teyton
Journal:  Mol Immunol       Date:  2018-10-06       Impact factor: 4.407

Review 7.  Insights into rheumatic diseases from next-generation sequencing.

Authors:  Laura T Donlin; Sung-Ho Park; Eugenia Giannopoulou; Aleksandra Ivovic; Kyung-Hyun Park-Min; Richard M Siegel; Lionel B Ivashkiv
Journal:  Nat Rev Rheumatol       Date:  2019-06       Impact factor: 20.543

8.  Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics.

Authors:  Leif S Ludwig; Caleb A Lareau; Jacob C Ulirsch; Elena Christian; Christoph Muus; Lauren H Li; Karin Pelka; Will Ge; Yaara Oren; Alison Brack; Travis Law; Christopher Rodman; Jonathan H Chen; Genevieve M Boland; Nir Hacohen; Orit Rozenblatt-Rosen; Martin J Aryee; Jason D Buenrostro; Aviv Regev; Vijay G Sankaran
Journal:  Cell       Date:  2019-02-28       Impact factor: 41.582

9.  Tracking the immune response with single-cell genomics.

Authors:  Kathryn E Yost; Howard Y Chang; Ansuman T Satpathy
Journal:  Vaccine       Date:  2019-12-16       Impact factor: 3.641

Review 10.  Single-cell technologies in hepatology: new insights into liver biology and disease pathogenesis.

Authors:  Prakash Ramachandran; Kylie P Matchett; Ross Dobie; John R Wilson-Kanamori; Neil C Henderson
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-06-01       Impact factor: 46.802

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