Literature DB >> 29325146

Dramatic Changes in Malaria Population Genetic Complexity in Dielmo and Ndiop, Senegal, Revealed Using Genomic Surveillance.

Amy K Bei1,2,3, Makhtar Niang4, Awa B Deme2,3, Rachel F Daniels1,5, Fatoumata D Sarr6, Cheikh Sokhna7, Cheikh Talla6, Joseph Faye6, Nafissatou Diagne7, Souleymane Doucoure7, Souleymane Mboup2,8, Dyann F Wirth1,5, Adama Tall6, Daouda Ndiaye3, Daniel L Hartl1,5,9, Sarah K Volkman1,5,10, Aissatou Toure-Balde4.   

Abstract

Dramatic changes in transmission intensity can impact Plasmodium population diversity. Using samples from 2 distant time-points in the Dielmo/Ndiop longitudinal cohorts from Senegal, we applied a molecular barcode tool to detect changes in parasite genotypes and complexity of infection that corresponded to changes in transmission intensity. We observed a striking statistically significant difference in genetic diversity between the 2 parasite populations. Furthermore, we identified a genotype in Dielmo and Ndiop previously observed in Thiès, potentially implicating imported malaria. This genetic surveillance study validates the molecular barcode as a tool to assess parasite population diversity changes and track parasite genotypes.
© The Author(s) 2018. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Dielmo/Ndiop; Senegal; genomic surveillance; malaria; molecular barcode

Mesh：

Year:  2018        PMID： 29325146      PMCID： PMC6279132          DOI： 10.1093/infdis/jix580

Source DB:  PubMed          Journal:  J Infect Dis        ISSN： 0022-1899            Impact factor:   5.226


  15 in total

1.  Natural history of Plasmodium falciparum malaria and determining factors of the acquisition of antimalaria immunity in two endemic areas, Dielmo and Ndiop (Senegal).

Authors:  C Rogier
Journal:  Bull Mem Acad R Med Belg       Date:  2000

2.  Clonal outbreak of Plasmodium falciparum infection in eastern Panama.

Authors:  Nicanor Obaldia; Nicholas K Baro; Jose E Calzada; Ana M Santamaria; Rachel Daniels; Wesley Wong; Hsiao-Han Chang; Elizabeth J Hamilton; Myriam Arevalo-Herrera; Socrates Herrera; Dyann F Wirth; Daniel L Hartl; Matthias Marti; Sarah K Volkman
Journal:  J Infect Dis       Date:  2014-10-21       Impact factor: 5.226

Review 3.  Measuring changes in Plasmodium falciparum transmission: precision, accuracy and costs of metrics.

Authors:  Lucy S Tusting; Teun Bousema; David L Smith; Chris Drakeley
Journal:  Adv Parasitol       Date:  2014       Impact factor: 3.870

4.  Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum.

Authors:  T J Anderson; B Haubold; J T Williams; J G Estrada-Franco; L Richardson; R Mollinedo; M Bockarie; J Mokili; S Mharakurwa; N French; J Whitworth; I D Velez; A H Brockman; F Nosten; M U Ferreira; K P Day
Journal:  Mol Biol Evol       Date:  2000-10       Impact factor: 16.240

5.  The rise and fall of malaria in a West African rural community, Dielmo, Senegal, from 1990 to 2012: a 22 year longitudinal study.

Authors:  Jean-François Trape; Adama Tall; Cheikh Sokhna; Alioune Badara Ly; Nafissatou Diagne; Ousmane Ndiath; Catherine Mazenot; Vincent Richard; Abdoulaye Badiane; Fambaye Dieye-Ba; Joseph Faye; Gora Ndiaye; Fatoumata Diene Sarr; Clémentine Roucher; Charles Bouganali; Hubert Bassène; Aissatou Touré-Baldé; Christian Roussilhon; Ronald Perraut; André Spiegel; Jean-Louis Sarthou; Luiz Pereira da Silva; Odile Mercereau-Puijalon; Pierre Druilhe; Christophe Rogier
Journal:  Lancet Infect Dis       Date:  2014-05-06       Impact factor: 25.071

6.  Quantifying the impact of human mobility on malaria.

Authors:  Amy Wesolowski; Nathan Eagle; Andrew J Tatem; David L Smith; Abdisalan M Noor; Robert W Snow; Caroline O Buckee
Journal:  Science       Date:  2012-10-12       Impact factor: 47.728

7.  High recombination rate in natural populations of Plasmodium falciparum.

Authors:  D J Conway; C Roper; A M Oduola; D E Arnot; P G Kremsner; M P Grobusch; C F Curtis; B M Greenwood
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

8.  The Dielmo project: a longitudinal study of natural malaria infection and the mechanisms of protective immunity in a community living in a holoendemic area of Senegal.

Authors:  J F Trape; C Rogier; L Konate; N Diagne; H Bouganali; B Canque; F Legros; A Badji; G Ndiaye; P Ndiaye
Journal:  Am J Trop Med Hyg       Date:  1994-08       Impact factor: 2.345

9.  An innovative tool for moving malaria PCR detection of parasite reservoir into the field.

Authors:  Lydie Canier; Nimol Khim; Saorin Kim; Vincent Sluydts; Somony Heng; Dany Dourng; Rotha Eam; Sophy Chy; Chanra Khean; Kaknika Loch; Malen Ken; Hokkean Lim; Sovannaroath Siv; Sochantha Tho; Pascal Masse-Navette; Charlotte Gryseels; Sambunny Uk; Karel Van Roey; Koen Peeters Grietens; Mao Sokny; Boukheng Thavrin; Char Meng Chuor; Vincent Deubel; Lies Durnez; Marc Coosemans; Didier Ménard
Journal:  Malar J       Date:  2013-11-09       Impact factor: 2.979

10.  A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking.

Authors:  Rachel Daniels; Sarah K Volkman; Danny A Milner; Nira Mahesh; Daniel E Neafsey; Daniel J Park; David Rosen; Elaine Angelino; Pardis C Sabeti; Dyann F Wirth; Roger C Wiegand
Journal:  Malar J       Date:  2008-10-29       Impact factor: 2.979
View more
  13 in total

1.  Pooled Deep Sequencing of Drug Resistance Loci from Plasmodium falciparum Parasites across Ethiopia.

Authors:  Nicholas F Brazeau; Ashenafi Assefa; Hussein Mohammed; Heven Seme; Abeba G Tsadik; Jonathan B Parr; Corinna Keeler; Nicholas J Hathaway; Steven R Meshnick; Jeffrey A Bailey; Moges Kassa; Jonathan J Juliano; Adugna Woyessa
Journal:  Am J Trop Med Hyg       Date:  2019-11       Impact factor: 2.345

2.  Impact of Multiplicity of Plasmodium falciparum Infection on Clinical Disease in Malawi.

Authors:  Dominique Earland; Andrea G Buchwald; Alick Sixpence; Mabvuto Chimenya; Milius Damson; Karl B Seydel; Don P Mathanga; Terrie E Taylor; Miriam K Laufer
Journal:  Am J Trop Med Hyg       Date:  2019-08       Impact factor: 2.345

3.  Malaria in Venezuela: changes in the complexity of infection reflects the increment in transmission intensity.

Authors:  M Andreína Pacheco; David A Forero-Peña; Kristan A Schneider; Melynar Chavero; Angel Gamardo; Luisamy Figuera; Esha R Kadakia; María E Grillet; Joseli Oliveira-Ferreira; Ananias A Escalante
Journal:  Malar J       Date:  2020-05-07       Impact factor: 2.979

4.  Multiplicity of Infection Is a Poor Predictor of Village-Level Plasmodium vivax and P. falciparum Population Prevalence in the Southwest Pacific.

Authors:  Cristian Koepfli; Andreea Waltmann; Maria Ome-Kaius; Leanne J Robinson; Ivo Mueller
Journal:  Open Forum Infect Dis       Date:  2018-09-21       Impact factor: 3.835

Review 5.  Applying next-generation sequencing to track falciparum malaria in sub-Saharan Africa.

Authors:  Sofonias K Tessema; Jaishree Raman; Craig W Duffy; Deus S Ishengoma; Alfred Amambua-Ngwa; Bryan Greenhouse
Journal:  Malar J       Date:  2019-09-03       Impact factor: 2.979

6.  Falciparum malaria from coastal Tanzania and Zanzibar remains highly connected despite effective control efforts on the archipelago.

Authors:  Andrew P Morgan; Nicholas F Brazeau; Billy Ngasala; Lwidiko E Mhamilawa; Madeline Denton; Mwinyi Msellem; Ulrika Morris; Dayne L Filer; Ozkan Aydemir; Jeffrey A Bailey; Jonathan B Parr; Andreas Mårtensson; Anders Bjorkman; Jonathan J Juliano
Journal:  Malar J       Date:  2020-01-28       Impact factor: 2.979

7.  Amplicon Sequencing as a Potential Surveillance Tool for Complexity of Infection and Drug Resistance Markers in Plasmodium falciparum Asymptomatic Infections.

Authors:  Kevin Wamae; Kelvin M Kimenyi; Victor Osoti; Zaydah R de Laurent; Leonard Ndwiga; Oksana Kharabora; Nicholas J Hathaway; Jeffrey A Bailey; Jonathan J Juliano; Philip Bejon; Lynette Isabella Ochola-Oyier
Journal:  J Infect Dis       Date:  2022-09-13       Impact factor: 7.759

8.  Parasite genetic diversity reflects continued residual malaria transmission in Vhembe District, a hotspot in the Limpopo Province of South Africa.

Authors:  Hazel B Gwarinda; Sofonias K Tessema; Jaishree Raman; Bryan Greenhouse; Lyn-Marié Birkholtz
Journal:  Malar J       Date:  2021-02-16       Impact factor: 2.979

9.  Genomic investigation of atypical malaria cases in Kanel, northern Senegal.

Authors:  Mouhamad Sy; Aida Sadikh Badiane; Awa Bineta Deme; Amy Gaye; Tolla Ndiaye; Fatou Ba Fall; Katherine J Siddle; Baba Dieye; Yaye Die Ndiaye; Mamadou Alpha Diallo; Khadim Diongue; Mame Cheikh Seck; Ibrahima Mbaye Ndiaye; Moustapha Cissé; Alioune Badara Gueye; Doudou Sène; Yakou Dieye; Tamba Souané; Bronwyn MacInnis; Sarah K Volkman; Dyann F Wirth; Daouda Ndiaye
Journal:  Malar J       Date:  2021-02-19       Impact factor: 2.979

10.  Describing the current status of Plasmodium falciparum population structure and drug resistance within mainland Tanzania using molecular inversion probes.

Authors:  Kara A Moser; Rashid A Madebe; Ozkan Aydemir; Mercy G Chiduo; Celine I Mandara; Susan F Rumisha; Frank Chaky; Madeline Denton; Patrick W Marsh; Robert Verity; Oliver J Watson; Billy Ngasala; Sigsbert Mkude; Fabrizio Molteni; Ritha Njau; Marian Warsame; Renata Mandike; Abdunoor M Kabanywanyi; Muhidin K Mahende; Erasmus Kamugisha; Maimuna Ahmed; Reginald A Kavishe; George Greer; Chonge A Kitojo; Erik J Reaves; Linda Mlunde; Dunstan Bishanga; Ally Mohamed; Jonathan J Juliano; Deus S Ishengoma; Jeffrey A Bailey
Journal:  Mol Ecol       Date:  2020-11-29       Impact factor: 6.185
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.