Literature DB >> 29313333

Dithiothreitol-Regulated Coverage of Oligonucleotide-Modified Gold Nanoparticles To Achieve Optimized Biosensor Performance.

Pingping Liang1, Juan Canoura1, Haixiang Yu1, Obtin Alkhamis1, Yi Xiao1.   

Abstract

DNA-modified gold nanoparticles (AuNPs) are useful signal-reporters for detecting diverse molecules through various hybridization- and enzyme-based assays. However, their performance is heavily dependent on the probe DNA surface coverage, which can influence both target binding and enzymatic processing of the bound probes. Current methods used to adjust the surface coverage of DNA-modified AuNPs require the production of multiple batches of AuNPs under different conditions, which is costly and laborious. We here develop a single-step assay utilizing dithiothreitol (DTT) to fine-tune the surface coverage of DNA-modified AuNPs. DTT is superior to the commonly used surface diluent, mercaptohexanol, as it is less volatile, allowing for the rapid and reproducible controlling of surface coverage on AuNPs with only micromolar concentrations of DTT. Upon adsorption, DTT forms a dense monolayer on gold surfaces, which provides antifouling capabilities. Furthermore, surface-bound DTT adopts a cyclic conformation, which reorients DNA probes into an upright position and provides ample space to promote DNA hybridization, aptamer assembly, and nuclease digestion. We demonstrate the effects of surface coverage on AuNP-based sensors using DTT-regulated DNA-modified AuNPs. We then use these AuNPs to visually detect DNA and cocaine in colorimetric assays based on enzyme-mediated AuNP aggregation. We determine that DTT-regulated AuNPs with lower surface coverage achieve shorter reaction times and lower detection limits relative to those for assays using untreated AuNPs or DTT-regulated AuNPs with high surface coverage. Additionally, we demonstrate that our DTT-regulated AuNPs can perform cocaine detection in 50% urine without any significant matrix effects. We believe that DTT regulation of surface coverage can be broadly employed for optimizing DNA-modified AuNP performance for use in biosensors as well as drug delivery and therapeutic applications.

Entities:  

Keywords:  DNA detection; DNA surface coverage; cocaine detection; dithiothreitol; enzyme-assisted target recycling; gold nanoparticles

Mesh:

Substances:

Year:  2018        PMID: 29313333      PMCID: PMC5794567          DOI: 10.1021/acsami.7b16914

Source DB:  PubMed          Journal:  ACS Appl Mater Interfaces        ISSN: 1944-8244            Impact factor:   9.229


  34 in total

1.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.

Authors:  C Tuerk; L Gold
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

2.  Sensitive and selective amplified fluorescence DNA detection based on exonuclease III-aided target recycling.

Authors:  Xiaolei Zuo; Fan Xia; Yi Xiao; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

3.  A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles.

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Journal:  Anal Chem       Date:  2000-11-15       Impact factor: 6.986

Review 4.  Nucleic acid detection using non-radioactive labelling methods.

Authors:  E S Mansfield; J M Worley; S E McKenzie; S Surrey; E Rappaport; P Fortina
Journal:  Mol Cell Probes       Date:  1995-06       Impact factor: 2.365

5.  Controlled recovery of the transcription of nanoparticle-bound DNA by intracellular concentrations of glutathione.

Authors:  Gang Han; Nandini S Chari; Ayush Verma; Rui Hong; Craig T Martin; Vincent M Rotello
Journal:  Bioconjug Chem       Date:  2005 Nov-Dec       Impact factor: 4.774

6.  Effect of the spacer structure on the stability of gold nanoparticles functionalized with monodentate thiolated poly(ethylene glycol) ligands.

Authors:  Florian Schulz; Tobias Vossmeyer; Neus G Bastús; Horst Weller
Journal:  Langmuir       Date:  2013-07-24       Impact factor: 3.882

7.  Cleavage of single- and double-stranded DNAs containing an abasic residue by Escherichia coli exonuclease III (AP endonuclease VI).

Authors:  T Shida; M Noda; J Sekiguchi
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

8.  Hybridization and enzymatic extension of au nanoparticle-bound oligonucleotides.

Authors:  Sheila R Nicewarner Peña; Surabhi Raina; Glenn P Goodrich; Nina V Fedoroff; Christine D Keating
Journal:  J Am Chem Soc       Date:  2002-06-26       Impact factor: 15.419

9.  Controlled formation and characterization of dithiothreitol-conjugated gold nanoparticle clusters.

Authors:  De-Hao Tsai; Tae Joon Cho; Frank W DelRio; Justin M Gorham; Jiwen Zheng; Jiaojie Tan; Michael R Zachariah; Vincent A Hackley
Journal:  Langmuir       Date:  2014-03-20       Impact factor: 3.882

10.  Self-assembled dithiothreitol on Au surfaces for biological applications: phospholipid bilayer formation.

Authors:  Tânia B Creczynski-Pasa; M Antonieta Daza Millone; Maximiliano L Munford; Vânia R de Lima; Tiago O Vieira; Guillermo A Benitez; André A Pasa; Roberto C Salvarezza; María E Vela
Journal:  Phys Chem Chem Phys       Date:  2008-12-24       Impact factor: 3.676

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  4 in total

Review 1.  Biomedical applications of nanoflares: Targeted intracellular fluorescence probes.

Authors:  Karim Khanmohammadi Chenab; Reza Eivazzadeh-Keihan; Ali Maleki; Paria Pashazadeh-Panahi; Michael R Hamblin; Ahad Mokhtarzadeh
Journal:  Nanomedicine       Date:  2019-02-28       Impact factor: 5.307

2.  Label-Free, Visual Detection of Small Molecules Using Highly Target-Responsive Multimodule Split Aptamer Constructs.

Authors:  Yingping Luo; Haixiang Yu; Obtin Alkhamis; Yingzhu Liu; Xinhui Lou; Boyang Yu; Yi Xiao
Journal:  Anal Chem       Date:  2019-05-14       Impact factor: 6.986

3.  Detection of nucleic acids via G-quadruplex-controlled l-cysteine oxidation and catalyzed hairpin assembly-assisted signal amplification.

Authors:  Piaopiao Chen; Pingyue Hu; Ke Huang; Erica Sawyer; Ke Sun; Binwu Ying; Xiawei Wei; Jia Geng
Journal:  RSC Adv       Date:  2018-12-05       Impact factor: 3.361

4.  An all-solid-state NO3- ion-selective electrode with gold nanoparticles solid contact layer and molecularly imprinted polymer membrane.

Authors:  Lei Zhang; Zhengying Wei; Pengcheng Liu
Journal:  PLoS One       Date:  2020-10-15       Impact factor: 3.240

  4 in total

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