| Literature DB >> 29310697 |
Cornelia Silaghi1,2, Marion Nieder3, Carola Sauter-Louis4,5, Gabriela Knubben-Schweizer4, Kurt Pfister1, Martin Pfeffer6.
Abstract
BACKGROUND: Anaplasma phagocytophilum is an obligate intracellular, tick-transmitted bacterium that causes granulocytic anaplasmosis in humans and several mammalian species including domestic ruminants where it is called tick-borne fever (TBF). Different genetic variants exist but their impact with regard to putative differences in host associations and pathogenicity are not yet completely understood.Entities:
Keywords: 16S rRNA gene; Anaplasma phagocytophilum; Cattle; Germany; Ixodes ricinus; Tick-borne fever; groEL gene; msp2 gene; msp4 gene
Mesh:
Substances:
Year: 2018 PMID: 29310697 PMCID: PMC5759301 DOI: 10.1186/s13071-017-2570-1
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Course of infection of observed heifers and cows in the herd in relation to clinical, microscopial and serological findings. Yellow, morulae in buffy coat smears; blue, real-time PCR-positive for A. phagocytophilum; green, positive titer >1:100; grey, herd screening; f, fever; B, Bayticol®-treatment; x, sampling point
Analysed sequences of A. phagocytophilum in this herd in combination with clinical symptoms of the infected animals
| Cow no./ tick no./roe deer no. | Date of positive PCR | Ct-value | Clinic |
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|---|---|---|---|---|---|---|---|
| 7 | 19.06.11 | 23 | not examined |
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| 14 | 04.06.11 | 17 | F, RM |
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| 22 | 30.05.11 | 15 | F, RM, LLO |
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| 09.07.11 | 28.5 | no clinic | 16S-20 (W) | too short | negative | M4-50 | |
| 03.10.11 | 28 | no clinic | 16S-20 (W) | g-15 (N) | negative | M4-51 | |
| 28 | 03.10.11 | 20 | F, RM, DC | 16S-20 (W) | g-15 (N) | negative | M4-51 |
| 30 | 17.05.11 | 27.5 | F, RM, DC | 16S-20 (W) | g-18 (X) | too short | M4-50 |
| 35 | 17.05.11 | 15 | F, RM |
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| 36 | 19.05.11 | 13.5 | F, RM, DC | 16S-20 (W) | too short | M2-26 | M4-49 |
| 42 | 04.09.11 | 36 | not examined | 16S-20 (W) | too short | negative | M4-49 |
| 46 | 22.05.11 | 19.5 | F, RM, DC, LLO |
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| 21.08.11 | 30 | no clinic | negative | negative | negative | M4-50 | |
| 49 | 19.05.11 | 31.5 | F, RM, DC, LLO | 16S-20 (W) | g-15 (N) | negative | M4-51 |
| 52 | 14.09.11 | 19.5 | F, RM, LLO | 16S-20 (W) | too short | M2-27 | M4-51 |
| 53 | 22.06.11 | 14 | F, RM, DC | 16S-20 (W) | g-18 (X) | negative | M4-49 |
| 57 | 04.06.11 | 18.5 | F, RM, DC |
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| 04.09.11 | 30 | no clinic | 16S-20 (W) | negative | negative | M4-49 | |
| 58 | 17.05.11 | 24.5 | F, RM, DC |
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| 09.07.11 | 31 | no clinic | 16S-20 (W) | negative | negative | negative | |
| 59 | 04.09.11 | 26.5 | no clinic | 16S-22 (Y) | too short | negative | M4-13 ( |
| 61 | 22.06.11 | 18 | F, RM, DC, LLO |
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| 09.07.11 | 22 | no clinic | 16S-20 (W) | negative | M2-27 | M4-51 | |
| Tick 83a | 13.05.11 | 29 | 16S-7 (I) | negative | negative | negative | |
| Tick 90b | 06.06.11 | 20 | 16S-20 (W) | too short | negative | M4-51 | |
| Tick 94b | 06.06.11 | 23 | 16S-20 (W) | too short | negative | M4-49 | |
| Tick 96b | 06.06.11 | 19 | 16S-20 (W) | too short | negative | M4-51 | |
| Tick 167a | 25.06.11 | 30 | 16S-22 (Y) | too short | negative | M4-13 ( | |
| Roe deer 1 | 26.06.11 | 30 | 16S-21 (X) | negative | M2-9 (J) | too short | |
| Roe deer 2 | 17.09.11 | 27.5 | 16S-21 (X) | negative | negative | negative | |
| Roe deer 3 | 15.10.11 | 30 | 16S-19 (V)-like sequence | too short | negative | too short |
Abbreviations: F fever, RM reduced milk yield, DC discharge from eyes and nose, LLO lower limb oedema and stiff walking
Note: Nomenclature of gene variants is following previous denominations [17, 23, 25] with numbers after the gene abbreviation. The letter codes shown for some of these variants are an alternative, also unofficial nomenclature. Particular combinations of these four gene variants were frequently observed with 16S-20 (W), g-18 (X), M2-26, and M4-49 are given in bold; negative = gene locus could not be amplified; too short = gene locus was amplified but the sequence read was too short for full comparison and thus for allocation to a particular variant. Ct-values are provided as mean of two independent real-time PCRs targeting the msp2-gene, which was used for screening. Please note that tick screening was done only once. A ct-value ≤38 was considered positive for A. phagocytophilum DNA
aCollected from roe deer
bCollected from heifer
Serum titers of IgG against A. phagocytophilum in a dairy cattle herd (heifers and cows) from May 2011 to January 2012
| Month | Total no. of cowsa | Titers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | 1:50 | 1:100 | 1:200 | 1:400 | 1:800 | 1:1600 | 1:3200 | 1:6400 | ||
| May | 50 (39, 11) | 48 (37, 11) | 2 (2, 0) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| July | 58 (39, 19) | 29 (20, 9) | 8 (7, 1) | 7 (5, 1) | 8 (3, 5) | 1 (0, 1) | 0 | 2 (1, 1) | 2 (2, 0) | 1 (1, 0) |
| September | 55 (36, 19) | 30 (19, 11) | 10 (7, 3) | 11 (7, 4) | 3 (3, 0) | 1 (0, 1) | 0 | 0 | 0 | 0 |
| November | 56 (37, 19) | 33 (21, 12) | 13 (8, 5) | 7 (3, 4) | 0 | 0 | 3 (2, 1) | 0 | 0 | 0 |
| January | 52 (34, 18) | 40 (25, 15) | 10 (9, 1) | 1 (0, 1) | 1 (0, 1) | 0 | 0 | 0 | 0 | 0 |
aNumbers of cows and heifers, in that order, are indicated in parentheses
Haematological and biochemical findings for 10 heifers after first real-time PCR positive result for A. phagocytophilum
| Parameter | Reference values | Days after first positive real-time PCR result | |||||
|---|---|---|---|---|---|---|---|
| 0 | 7 | 14 | 21 | 28 | 200 | ||
| Leukocytes | 4–10 G/l | 3.55 (1.9–6.2)* | 5.8 (2.9–9.8) | 6.95 (3.3–10.6) | 6.85 (2.9–19.5) | 6.95 (4.0–11.3) | 8.4 (6.5–14.4) |
| Erythrocytes | 5–8 T/l | 6.16 (4.8–9.1)* | 6.12 (4.9–8.3) | 6.495 (5.3–9.3)* | 6.135 (4.9–8.6)* | 6.42 (5.0–9.2) | 9.51 (6.3–11.6) |
| Haemoglobin | 10–13 g/dl | 9.75 (7–15.1) | 9.3 (7.4–14.8) | 10.25 (8.2–14.5)* | 9.35 (8.3–14.3)* | 9.75 (7.8–15.1) | 14.4 (9.4–17.6) |
| Haematocrit | 30–36% | 29.8 (22.3–49.3) | 29.7 (24.9–45.9) | 33.05 (26.5–47.5) | 30.2 (26.5–46.6) | 31.4 (25.4–48.4) | 40.6 (29.9–49.7) |
| Thrombocytes | 200–800 G/L | 87 (22–333) | 192 (100–436) | 276.5 (61–584) | 312 (96–513)* | 338.5 (28–484) | 175 (94–421) |
| Banded neutrophils | 0–0.1 G/l | 0.24 (0–0.6) | 0.23 (0.1–1.8) | 0.405 (0.07–1.04) | 0.165 (0.04–5.66) | 0.445 (0.05–1) | 0.245 (0–1.68) |
| Seg. neutrophils | 0.85–1.53 G/l | 1.52 (0.9–3.8) | 1.98 (0.7–3.5) | 2.555 (0.8–5.15) | 2.435 (1.3–9.6) | 3.615 (1.1–5.5) | 4.18 (3.1–8.4) |
| Lymphocytes | 2.5–5.5 G/l | 1.09 (0.6–2.4)* | 3.2 (0.9–5.2) | 3.62 (0.91–5.1) | 3.025 (1.16–6.79) | 3.705 (1.08–6.14) | 2.46 (1.56–4.3) |
| Monocytes | 0–0.2 G/l | 0.02 (0–0.32)* | 0.17 (0–0.69) | 0.225 (0.03–0.9) | 0.205 (0–0.47) | 0.24 (0.04–0.77) | 0.2 (0.07–0.65) |
| Eosinophils | 0–0.9 G/l | 0.05 (0–0.68) | 0.06 (0–2.8) | 0.11 (0–0.42)* | 0.17 (0–1.19) | 0.23 (0–0.98) | 0.55 (0–2.3) |
| Basophiles | 0–0.1 G/l | 0 (0–0) | 0 (0–0) | 0 (0–0) | 0 (0–0.11) | 0 (0–0.11) | 0 (0–0.12) |
| Urea nitrogen | ≤5.,5 mmol/l | 6.25 (2.6–9.8) | 4.75 (2.7–6) | 4.4 (2.8–7) | 4.65 (1.9–6.5) | 4.5 (1.4–7.7) | 4.65 (3.8–8.2) |
| Creatinine | ≤110 μmol/l | 80.83 (59.0–133.8)* | 68.645 (58.1–119.9) | 79.54 (61.6–115.2)* | 63.605 (50.9–110.6) | 71.265 (54.5–97.6) | 57.105 (10–96.9) |
| Total protein | 40–80 g/l | 75.65 (64.9–91.4) | 75.7 (66.9–90.8) | 75.95 (67.5–88.1) | 74.1 (66–88.5) | 74.3 (62.2–89.4) | 75.25 (64.5–81.9) |
| Albumin | ≤40 g/l | 33.65 (28.9–38.7)* | 34.15 (21.9–41)* | 33.2 (28.6–45.1)* | 32.85 (23.4–40.9)* | 34.6 (28.2–39.6)* | 37.3 (29.9–40.4) |
| Bilirubin | ≤8.5 μmol/l | 3.885 (1.7–14.3)* | 2.27 (1.5–5.5)* | 1.7 (0.7–2.52)* | 2.04 (0.46–14.6)* | 1.74 (0.91–5.12)* | 0.815 (0.11–1.43) |
| AST | ≤80 U/l | 74.45 (48.6–121.8) | 85.95 (56.5–130.7) | 74.85 (62.9–95.2) | 76.6 (58–110.7) | 76.05 (64.7–108.3) | 89.15 (59.2–146.9) |
| γ-GT | ≤36 U/l | 16.35 (8.4–23.6)* | 21 (9.8–32.1)* | 19.4 (12.8–63.3)* | 21 (13.1–64.4) | 17.65 (10.3–75.2)* | 38 (29.4–71) |
| GLDH | ≤16 U/l | 5.345 (3.3–26.5)* | 5.6 (2.6–26.3) | 5.915 (4.1–13.7)* | 5.77 (3.5–20.6)* | 7.43 (1.3–26.9)* | 15.13 (10.09–47.52) |
| CK | ≤245 U/l | 244 (95–824) | 142 (70–710) | 150.5 (78–387) | 159.5 (79–1538) | 193 (97–480) | 154 (105–795) |
| P | 1.5–3 mmol/l | 1.5 (1.1–3.2) | 2.1 (1.3–2.7) | 2.35 (1.7–2.7) | 2.25 (1.6–2.9) | 2.2 (1.7–2.8) | 2.2 (1.9–2.4) |
| Mg | 0.74–1.44 mmol/l | 0.78 (0.73–1.08)* | 0.9 (0.73–1.01)* | 0.93 (0.75–1.07)* | 0.94 (0.72–1.01) | 0.98 (0.82–1.06) | 1.005 (0.9–1.12) |
| Ca | 2–3 mmol/l | 2.045 (0.97–2.34)* | 2.17 (1.94–2.4)* | 2.23 (1.92–2.38)* | 2.245 (2.09–2.4)* | 2.285 (1.99–2.43)* | 2.455 (2.1–2.71) |
| Sodium | 130–150 mmol/l | 135 (131–139) | 137.5 (135–140) | 138 (133–143) | 138 (134–140) | 137.5 (135–140) | 140 (131–144) |
| Potassium | 3.5–5.3 mmol/l | 4.58 (3.8–5.9) | 4.605 (4.0–5.5)* | 4.845 (4.4–6.1) | 5.19 (4.4–5.7) | 4.985 (4.4–6.6) | 5.27 (4.78–6.01) |
| Chloride | 98–106 mmol/l | 98 (90–102) | 97 (91–100) | 95 (93–99) | 96 (92–102) | 96 (92–100) | 97 (93–104) |
Note: Values are medians (minimum–maximum)
*P < 0.01 (Wilcoxon signed-rank test for paired samples)
Nucleotide differences of Anaplasma phagocytophilum in the amplified partial genes
| Gene | Variante | Host ( | Nucleotide position | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76 | 80 | 84 | 175 | 237 | |||||||||||
|
| 16S-7 (I) | tick (1) | G | A | A | A | G | ||||||||
| (497 bp) | 16S-19 (V)-like | roe deer (1) | A | G | A | C | A | ||||||||
| 16S-20 (W) | cow (20), ticks (3) | A | A | A | C | G | |||||||||
| 16S-21 (X) | roe deer (2) | G | A | A | C | G | |||||||||
| 16S-22 (Y) | cow (1), ticks (1) | G | A | G | C | G | |||||||||
| 780 | 840 | ||||||||||||||
|
| g-15 (N) | cow (3) | A | T | |||||||||||
| (530 bp) | g-18 (X) | cow (10) | G | C | |||||||||||
| 249 | 265 | 291 | |||||||||||||
|
| m2-9 (J) | roe deer (1) | T | C | T | further 45 nucleotide differences to m2-26 and m2-27 | |||||||||
| (893 bp) | m2-26 | cow (9) | T | A | A | ||||||||||
| m2-27 | cow (2) | A | C | G | |||||||||||
| 375 | 390 | 405 | 411 | 427 | 450 | 462 | 510 | 516 | 603 | 612 | 672 | 678 | |||
|
| m4-13 ( | cow (1), tick (1) | G | G | T | G | A | T | T | C | C | T | C | A | C |
| (343 bp) | m4-49 | cow (12), tick (1) | T | A | C | A | G | T | C | C | T | C | T | A | C |
| m4-50 | cow (3) | T | A | C | A | G | C | C | T | C | C | T | G | T | |
| m4-51 | cow (5), tick (2) | C | G | T | G | A | T | T | C | T | C | T | A | C | |
Note: Anaplasma phagocytophilum HZ complete genome (NC_007797) was used as reference strain analogous to Silaghi et al. [23]
Nucleotide positions indicate the relative position to the genes:
a1433 bp of rrsA 16S ribosomal RNA (Gene ID: 3930754)
b1653 bp of groEL chaperonin groEL (Gene ID: 3930333)
c1098 bp of APH_1361 major surface protein 2 (Gene ID: 3930710)
d849 bp of msp4 major surface protein 4 (Gene ID: 3930710)
eNot official nomenclature; letters in parentheses are based on nomenclature in other publications [17, 23, 25]