| Literature DB >> 29308047 |
Paolo Ramoni Perazzi1, Karl L Schuchmann2,3, Magdiel Ablan Bortone4, Alejandra Soto Werschitz5.
Abstract
BACKGROUND: Lesbia nuna, a hummingbird distributed in the tropical Andes, has been included in Venezuela's bird list on the basis of a specimen collected in 1873 at Sierra Nevada, Mérida and deposited in the Natural History Museum, London, with no further records for this country since then. This record, largely considered as valid by most authors, has been questioned by others, although without formal analyses. NEW INFORMATION: The potential habitat range of the Green-Tailed Trainbearer, Lesbia nuna gouldii (Trochilidae), in the northern Andes from Ecuador to Venezuela was modelled, using maximum entropy niche modelling, environmental covariates and records from locations across the Colombian Andes. The predicted suitable habitat range corresponded well to the known range of the subspecies L. n. gouldii in Colombia and clearly excluded Sierra Nevada. Therefore, these analyses suggest that this species should be removed from the Venezuelan bird list.Entities:
Keywords: Colombia; Lesbia nuna gouldii; Venezuela; distribution; model; suitable habitat
Year: 2017 PMID: 29308047 PMCID: PMC5742234 DOI: 10.3897/BDJ.5.e22092
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Figure 1.Map of northern Andes showing: (1) areas from 700 m to 1700 m a.s.l. (lighter grey); (2) areas from 1700 m to 3800 m a.s.l. (darker grey); (3) recording localities of used in the authors' ENMs analyses (solid circles); (4) "Pamplona" in Norte de Santander Department (solid diamond); (5) Bolívar Peak (= “El Picácho de la Colúna” according to Goering 1958) in whose vicinity the “Venezuelan” specimen of would have been collected (solid triangle).
Pearson's correlations between continuous environmental variables, polyserial correlations between continuous and categorical environmental variables and polychoric correlations between the categorical environmental variables for the record localities of in Colombia. Continuous variables: Elev, elevation; Bio01, annual mean temperature; Bio02, mean monthly temperature range; Bio03, isothermality; Bio04, temperature seasonality; Bio05, max temperature of the warmest month; Bio06, min temperature of the coldest month; Bio07, temperature annual range; Bio08, mean temperature of the wettest quarter; Bio09, mean temperature of the driest quarter; Bio10, mean temperature of the warmest quarter; Bio11, mean temperature of the coldest quarter; Bio12, annual precipitation; Bio13, precipitation of the wettest month; Bio14, precipitation of the driest month; Bio15, precipitation seasonality; Bio16, precipitation of the wettest quarter; Bio17, precipitation of the driest quarter; Bio18, precipitation of warmest quarter; Bio19, precipitation of the coldest quarter. Categorical variables: Soil and Geol, geology.
| Bio01 | Bio02 | Bio03 | Bio04 | Bio05 | Bio06 | Bio07 | Bio08 | Bio09 | Bio10 | Bio11 | Bio12 | Bio13 | Bio14 | Bio15 | Bio16 | Bio17 | Bio18 | Bio19 | Soil | Geol | |
| Elev | -0.99 | -0.41 | -0.29 | -0.07 | -0.96 | -0.97 | -0.10 | -0.98 | -0.99 | -0.98 | -0.99 | -0.34 | -0.44 | 0.07 | -0.47 | -0.44 | 0.04 | 0.04 | -0.54 | -0.28 | -0.18 |
| Bio01 | - | 0.40 | 0.22 | 0.14 | 0.98 | 0.97 | 0.14 | 1.00 | 1.00 | 1.00 | 1.00 | 0.26 | 0.36 | -0.17 | 0.52 | 0.37 | -0.15 | -0.09 | 0.48 | 0.20 | 0.12 |
| Bio02 | - | -0.23 | 0.03 | 0.54 | 0.21 | 0.83 | 0.42 | 0.40 | 0.40 | 0.41 | -0.19 | -0.04 | -0.27 | 0.35 | -0.06 | -0.30 | -0.55 | 0.03 | -0.20 | 0.16 | |
| Bio03 | - | -0.44 | 0.09 | 0.40 | -0.74 | 0.20 | 0.22 | 0.18 | 0.24 | 0.61 | 0.54 | 0.58 | -0.12 | 0.54 | 0.59 | 0.60 | 0.27 | 0.58 | 0.62 | ||
| Bio04 | - | 0.22 | 0.11 | 0.27 | 0.12 | 0.18 | 0.20 | 0.08 | -0.01 | 0.04 | -0.18 | 0.24 | 0.06 | -0.20 | -0.25 | 0.20 | -0.22 | -0.40 | |||
| Bio05 | - | 0.92 | 0.31 | 0.98 | 0.98 | 0.98 | 0.98 | 0.20 | 0.33 | -0.24 | 0.57 | 0.33 | -0.22 | -0.22 | 0.47 | 0.11 | 0.07 | ||||
| Bio06 | - | -0.10 | 0.96 | 0.97 | 0.96 | 0.96 | 0.42 | 0.50 | -0.02 | 0.47 | 0.50 | 0.01 | 0.07 | 0.56 | 0.31 | 0.17 | |||||
| Bio07 | - | 0.16 | 0.13 | 0.16 | 0.14 | -0.50 | -0.36 | -0.53 | 0.29 | -0.37 | -0.56 | -0.72 | -0.16 | -0.48 | -0.24 | ||||||
| Bio08 | - | 0.99 | 0.99 | 1.00 | 0.22 | 0.32 | -0.19 | 0.49 | 0.32 | -0.17 | -0.10 | 0.44 | 0.18 | 0.11 | |||||||
| Bio09 | - | 1.00 | 0.99 | 0.29 | 0.39 | -0.14 | 0.51 | 0.40 | -0.12 | -0.09 | 0.52 | 0.21 | 0.11 | ||||||||
| Bio10 | - | 0.99 | 0.24 | 0.35 | -0.20 | 0.54 | 0.35 | -0.18 | -0.11 | 0.47 | 0.17 | 0.09 | |||||||||
| Bio11 | - | 0.25 | 0.35 | -0.17 | 0.52 | 0.36 | -0.15 | -0.09 | 0.46 | 0.20 | 0.14 | ||||||||||
| Bio12 | - | 0.95 | 0.72 | -0.09 | 0.97 | 0.77 | 0.61 | 0.86 | 0.56 | 0.23 | |||||||||||
| Bio13 | - | 0.58 | 0.16 | 0.99 | 0.63 | 0.42 | 0.89 | 0.49 | 0.23 | ||||||||||||
| Bio14 | - | -0.60 | 0.57 | 0.98 | 0.67 | 0.44 | 0.43 | 0.17 | |||||||||||||
| Bio15 | - | 0.12 | -0.58 | -0.49 | 0.12 | -0.19 | 0.05 | ||||||||||||||
| Bio16 | - | 0.62 | 0.44 | 0.91 | 0.53 | 0.24 | |||||||||||||||
| Bio17 | - | 0.73 | 0.49 | 0.44 | 0.16 | ||||||||||||||||
| Bio18 | - | 0.26 | 0.34 | 0.09 | |||||||||||||||||
| Bio19 | - | 0.45 | 0.02 | ||||||||||||||||||
| Soil | - | 0.46 |
Figure 2.Comparison of the areas under the curves for both training (black) and test (grey) of the ENMs using the 42 localities where has been recorded in Colombia (excluding "Pamplona" and the four most highly autocorrelated localities) for each of the four environmental variable combinations: continuous variables alone (= climate and elevation, CON), continuous variables and geology (C+G), continuous variables and soil (C+S) and the combination of all (ALL). “W” and “p” are, respectively, the values of the statistics and the probability of Wilcoxon rank sum tests.
Summary statistics for explanatory variables used in ENMs for the 42 localities where has been recorded in Colombia and for the same elevational range in the Venezuelan Andes. In the categorical variables, “n” refers to the number of localities (Colombia) or the number of pixels (Venezuela). In Geology, codes correspond to those provided by layer GEO6EXP_ID.
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| Continuous | Median | Min | Max | Median | Min | Max |
| Elev | 2614.0 | 1654.0 | 3522.0 | 2263.0 | 1654.0 | 3522.0 |
| Bio03 | 81.0 | 75.0 | 91.0 | 81.0 | 75.0 | 84.0 |
| Bio04 | 303.5 | 185.0 | 640.0 | 428.0 | 339.0 | 608.0 |
| Bio07 | 113.0 | 98.0 | 141.0 | 137.0 | 110.0 | 149.0 |
| Bio12 | 991.5 | 772.0 | 2285.0 | 1021.0 | 706.0 | 1478.0 |
| Bio14 | 35.0 | 20.0 | 123.0 | 22.0 | 8.0 | 38.0 |
| Bio15 | 40.0 | 25.0 | 60.0 | 49.0 | 37.0 | 68.0 |
| Bio18 | 290.5 | 153.0 | 685.0 | 310.0 | 198.0 | 503.0 |
| Nominal | Code |
| % | Code |
| % |
| Soil | 16039 | 17 | 40.5 | 27614 | 172 | 30.8 |
| 16047 | 10 | 23.8 | 27615 | 172 | 30.8 | |
| 16017 | 4 | 9.5 | 27616 | 107 | 19.1 | |
| 16015 | 4 | 9.5 | 27621 | 59 | 10.6 | |
| Others(04) | 7 | 16.7 | Others (04) | 49 | 8.8 | |
| Geology | 219 | 15 | 35.7 | 0 | 138 | 24.7 |
| 434 | 6 | 14.3 | 230 | 115 | 20.6 | |
| 542 | 5 | 11.9 | 219 | 36 | 6.4 | |
| Others (10) | 19 | 38.1 | Others (33) | 270 | 48.3 | |
Average relative contribution of each environmental variable to the environmental niche model. C%: percent contribution values; PI: permutation importance; ALL = model combining all variables; CON = model based uniquely on continuous variables (bioclimatic and elevation); C+G = model combining continuous and geologic variables; C+S = models combining continuous and soil variables.
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| Variables | C% | PI | C% | PI | C% | PI | C% | PI |
| Bio03 | 0.6 | 2.5 | 15.5 | 13.5 | 3.1 | 4.7 | 1.0 | 1.1 |
| Bio04 | 0.2 | 1.3 | 11.3 | 14.5 | 2.2 | 12.0 | 0.5 | 2.3 |
| Bio07 | 0.1 | 0.0 | 0.5 | 0.8 | 0.7 | 1.3 | 0.2 | 0.1 |
| Bio12 | 3.2 | 3.3 | 9.3 | 1.7 | 4.4 | 0.8 | 2.6 | 8.2 |
| Bio14 | 2.1 | 4.1 | 9.5 | 2.9 | 5.0 | 4.5 | 2.4 | 0.5 |
| Bio15 | 1.6 | 3.2 | 5.3 | 8.3 | 1.8 | 6.0 | 1.8 | 1.5 |
| Bio18 | 1.6 | 7.6 | 4.4 | 11.5 | 1.6 | 10.2 | 2.4 | 13.0 |
| Elevation | 19.6 | 22.1 | 44.2 | 46.8 | 29.4 | 37.0 | 20.9 | 27.9 |
| Geology | 14.1 | 9.3 | - | - | 51.8 | 23.5 | - | - |
| Soil | 57 | 46.5 | - | - | - | - | 68.1 | 45.3 |
Figure 3.Number of test localities omitted in Colombia, contrasted against the number of pixels predicted for Ecuador. ● ALL models, ▲C+S , ○ CON, □ C+G, combined with seven thresholds. A5 refers to ALL model + Equal training sensitivity and specificity logistic threshold and D6 refers to C+S + Maximum training sensitivity plus specificity logistic threshold.
Figure 5.Female (left) and male (right) Green-tailed Trainbearers (), from Volcan Pichincha, Ecuador. Photos: Dr. Luis Mazariegos.