Literature DB >> 29306571

Genomic analyses of five Roseivirga species: Insights into marine adaptation.

Chitra Selvaratnam1, Suganthi Thevarajoo1, Kian Mau Goh1, Kok-Gan Chan2, Chun Shiong Chong3.   

Abstract

To date, the genus Roseivirga consists of six species with one subspecies and is one of the least-studied genera among the family Flammeovirgaceae. In order to further explore this genus, the genome sequences of five Roseivirga spp. were compared and described in this study. The Roseivirga genomes have similar sizes in the range of 4.08-4.47Mb with an average of 4.22Mb. Several key proteins related to osmotic stress adaptation were identified in Roseivirga spp. including betaine transporter, choline dehydrogenase, and glutamate synthases. Significant amount of proteins associated with amino acid transport and metabolism were also present in Roseivirga genome. All five Roseivirga spp. were able to grow in medium contained casamino acids (mixture of amino acids) as sole carbon or nitrogen sources. Taken together, these findings suggested the potential role of Roseivirga in decomposing organic nitrogen matter in marine environment.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Comparative genomics; Flammeovirgaceae; Genome sequencing; Marine bacteria; Roseivirga spp

Mesh:

Year:  2018        PMID: 29306571     DOI: 10.1016/j.margen.2017.12.008

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  1 in total

1.  Genome sequence of an uncharted halophilic bacterium Robertkochia marina with deciphering its phosphate-solubilizing ability.

Authors:  Ming Quan Lam; Sye Jinn Chen; Kian Mau Goh; Fazilah Abd Manan; Adibah Yahya; Mohd Shahir Shamsir; Chun Shiong Chong
Journal:  Braz J Microbiol       Date:  2020-11-03       Impact factor: 2.476

  1 in total

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