Literature DB >> 29306554

The 'Neglected' Soil Virome - Potential Role and Impact.

Akbar Adjie Pratama1, Jan Dirk van Elsas2.   

Abstract

Bacteriophages are among the most abundant and diverse biological units in the biosphere. They have contributed to our understanding of the central dogma of biology and have been instrumental in the evolutionary success of bacterial pathogens. In contrast to our current understanding of marine viral communities, the soil virome and its function in terrestrial ecosystems has remained relatively understudied. Here, we examine, in a comparative fashion, the knowledge gathered from studies performed in soil versus marine settings. We address the information with respect to the abundance, diversity, ecological significance, and effects of, in particular, bacteriophages on their host's evolutionary trajectories. We also identify the main challenges that soil virology faces and the studies that are required to accompany the current developments in marine settings.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  ecology; evolution; soil; virus community

Mesh:

Substances:

Year:  2018        PMID: 29306554     DOI: 10.1016/j.tim.2017.12.004

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  33 in total

Review 1.  Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales.

Authors:  Regina L Wilpiszeski; Jayde A Aufrecht; Scott T Retterer; Matthew B Sullivan; David E Graham; Eric M Pierce; Olivier D Zablocki; Anthony V Palumbo; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

Review 2.  Gene Transfer Agents in Symbiotic Microbes.

Authors:  Steen Christensen; Laura R Serbus
Journal:  Results Probl Cell Differ       Date:  2020

Review 3.  Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain.

Authors:  Philippe C Baveye; Wilfred Otten; Alexandra Kravchenko; María Balseiro-Romero; Éléonore Beckers; Maha Chalhoub; Christophe Darnault; Thilo Eickhorst; Patricia Garnier; Simona Hapca; Serkan Kiranyaz; Olivier Monga; Carsten W Mueller; Naoise Nunan; Valérie Pot; Steffen Schlüter; Hannes Schmidt; Hans-Jörg Vogel
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640

Review 4.  Plant-microbiome interactions: from community assembly to plant health.

Authors:  Pankaj Trivedi; Jan E Leach; Susannah G Tringe; Tongmin Sa; Brajesh K Singh
Journal:  Nat Rev Microbiol       Date:  2020-08-12       Impact factor: 60.633

Review 5.  Bacteriophages and their potential for treatment of gastrointestinal diseases.

Authors:  Yi Duan; Ry Young; Bernd Schnabl
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2021-11-15       Impact factor: 46.802

Review 6.  Life and death in the soil microbiome: how ecological processes influence biogeochemistry.

Authors:  Noah W Sokol; Eric Slessarev; Gianna L Marschmann; Alexa Nicolas; Steven J Blazewicz; Eoin L Brodie; Mary K Firestone; Megan M Foley; Rachel Hestrin; Bruce A Hungate; Benjamin J Koch; Bram W Stone; Matthew B Sullivan; Olivier Zablocki; Jennifer Pett-Ridge
Journal:  Nat Rev Microbiol       Date:  2022-02-28       Impact factor: 78.297

7.  Lysogeny in the Lactic Acid Bacterium Oenococcus oeni Is Responsible for Modified Colony Morphology on Red Grape Juice Agar.

Authors:  Amel Chaïb; Cécile Philippe; Féty Jaomanjaka; Olivier Claisse; Mickaël Jourdes; Patrick Lucas; Stéphanie Cluzet; Claire Le Marrec
Journal:  Appl Environ Microbiol       Date:  2019-09-17       Impact factor: 4.792

Review 8.  Community context matters for bacteria-phage ecology and evolution.

Authors:  Michael Blazanin; Paul E Turner
Journal:  ISME J       Date:  2021-06-14       Impact factor: 10.302

Review 9.  An Appraisal of Bacteriophage Isolation Techniques from Environment.

Authors:  Aparna Nair; Gaurav S Ghugare; Krishna Khairnar
Journal:  Microb Ecol       Date:  2021-06-17       Impact factor: 4.552

10.  Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities.

Authors:  Christian Santos-Medellin; Laura A Zinke; Anneliek M Ter Horst; Danielle L Gelardi; Sanjai J Parikh; Joanne B Emerson
Journal:  ISME J       Date:  2021-02-21       Impact factor: 10.302

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