Literature DB >> 29301967

Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina.

Benjamin Laenen1, Andrew Tedder1, Michael D Nowak1, Per Toräng2, Jörg Wunder3, Stefan Wötzel3, Kim A Steige1, Yiannis Kourmpetis4, Thomas Odong4, Andreas D Drouzas5, Marco C A M Bink4, Jon Ågren6, George Coupland7, Tanja Slotte8.   

Abstract

Plant mating systems have profound effects on levels and structuring of genetic variation and can affect the impact of natural selection. Although theory predicts that intermediate outcrossing rates may allow plants to prevent accumulation of deleterious alleles, few studies have empirically tested this prediction using genomic data. Here, we study the effect of mating system on purifying selection by conducting population-genomic analyses on whole-genome resequencing data from 38 European individuals of the arctic-alpine crucifer Arabis alpina We find that outcrossing and mixed-mating populations maintain genetic diversity at similar levels, whereas highly self-fertilizing Scandinavian A. alpina show a strong reduction in genetic diversity, most likely as a result of a postglacial colonization bottleneck. We further find evidence for accumulation of genetic load in highly self-fertilizing populations, whereas the genome-wide impact of purifying selection does not differ greatly between mixed-mating and outcrossing populations. Our results demonstrate that intermediate levels of outcrossing may allow efficient selection against harmful alleles, whereas demographic effects can be important for relaxed purifying selection in highly selfing populations. Thus, mating system and demography shape the impact of purifying selection on genomic variation in A. alpina These results are important for an improved understanding of the evolutionary consequences of mating system variation and the maintenance of mixed-mating strategies.

Entities:  

Keywords:  bottleneck; demographic history; fitness effects; genetic load; self-fertilization

Mesh:

Year:  2018        PMID: 29301967      PMCID: PMC5789905          DOI: 10.1073/pnas.1707492115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  A metapopulation perspective on genetic diversity and differentiation in partially self-fertilizing plants.

Authors:  Pär K Ingvarsson
Journal:  Evolution       Date:  2002-12       Impact factor: 3.694

2.  The distribution of plant mating systems: study bias against obligately outcrossing species.

Authors:  Boris Igic; Joshua R Kohn
Journal:  Evolution       Date:  2006-05       Impact factor: 3.694

3.  On the accumulation of deleterious mutations during range expansions.

Authors:  S Peischl; I Dupanloup; M Kirkpatrick; L Excoffier
Journal:  Mol Ecol       Date:  2013-11-04       Impact factor: 6.185

4.  The importance of Anatolian mountains as the cradle of global diversity in Arabis alpina, a key arctic-alpine species.

Authors:  Stephen W Ansell; Hans K Stenøien; Michael Grundmann; Stephen J Russell; Marcus A Koch; Harald Schneider; Johannes C Vogel
Journal:  Ann Bot       Date:  2011-06-28       Impact factor: 4.357

5.  The Effect of an Extreme and Prolonged Population Bottleneck on Patterns of Deleterious Variation: Insights from the Greenlandic Inuit.

Authors:  Casper-Emil T Pedersen; Kirk E Lohmueller; Niels Grarup; Peter Bjerregaard; Torben Hansen; Hans R Siegismund; Ida Moltke; Anders Albrechtsen
Journal:  Genetics       Date:  2016-11-30       Impact factor: 4.562

Review 6.  Evolutionary consequences of self-fertilization in plants.

Authors:  Stephen I Wright; Susan Kalisz; Tanja Slotte
Journal:  Proc Biol Sci       Date:  2013-06-07       Impact factor: 5.349

7.  Limited genomic consequences of mixed mating in the recently derived sister species pair, Collinsia concolor and Collinsia parryi.

Authors:  A Salcedo; S Kalisz; S I Wright
Journal:  J Evol Biol       Date:  2014-05-03       Impact factor: 2.411

8.  Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies.

Authors:  Peter D Keightley; Adam Eyre-Walker
Journal:  Genetics       Date:  2007-12       Impact factor: 4.562

9.  Three times out of Asia Minor: the phylogeography of Arabis alpina L. (Brassicaceae).

Authors:  Marcus A Koch; Christiane Kiefer; Dorothee Ehrich; Johannes Vogel; Christian Brochmann; Klaus Mummenhoff
Journal:  Mol Ecol       Date:  2006-03       Impact factor: 6.185

10.  Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains.

Authors:  Dorothee Ehrich; Myriam Gaudeul; Adane Assefa; Marcus A Koch; Klaus Mummenhoff; Sileshi Nemomissa; Christian Brochmann
Journal:  Mol Ecol       Date:  2007-06       Impact factor: 6.185

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  16 in total

Review 1.  Arabis alpina: A perennial model plant for ecological genomics and life-history evolution.

Authors:  Stefan Wötzel; Marco Andrello; Maria C Albani; Marcus A Koch; George Coupland; Felix Gugerli
Journal:  Mol Ecol Resour       Date:  2021-09-07       Impact factor: 8.678

2.  Origin of scarlet gynogenetic triploid Carassius fish: Implications for conservation of the sexual-gynogenetic complex.

Authors:  Tappei Mishina; Kazuhiro Nomoto; Yoshiyasu Machida; Tsutomu Hariu; Katsutoshi Watanabe
Journal:  PLoS One       Date:  2022-10-20       Impact factor: 3.752

3.  Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad.

Authors:  Myriam Heuertz; Clarisse Palma-Silva; Bárbara Simões Santos Leal; Cleber Juliano Neves Chaves; Vanessa Araujo Graciano; Christophe Boury; Luis Alberto Pillaca Huacre
Journal:  Heredity (Edinb)       Date:  2021-05-05       Impact factor: 3.832

4.  Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude.

Authors:  Ticao Zhang; Qin Qiao; Polina Yu Novikova; Qia Wang; Jipei Yue; Yanlong Guan; Shengping Ming; Tianmeng Liu; Ji De; Yixuan Liu; Ihsan A Al-Shehbaz; Hang Sun; Marc Van Montagu; Jinling Huang; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-20       Impact factor: 11.205

5.  Seed traits are pleiotropically regulated by the flowering time gene PERPETUAL FLOWERING 1 (PEP1) in the perennial Arabis alpina.

Authors:  Patrick William Hughes; Wim J J Soppe; Maria C Albani
Journal:  Mol Ecol       Date:  2019-03-15       Impact factor: 6.185

6.  Natural Variation in Adventitious Rooting in the Alpine Perennial Arabis alpina.

Authors:  Priyanka Mishra; Adrian Roggen; Karin Ljung; Maria C Albani
Journal:  Plants (Basel)       Date:  2020-02-03

7.  Population Genomics of the "Arcanum" Species Group in Wild Tomatoes: Evidence for Separate Origins of Two Self-Compatible Lineages.

Authors:  Ana M Florez-Rueda; Mathias Scharmann; Morgane Roth; Thomas Städler
Journal:  Front Plant Sci       Date:  2021-03-19       Impact factor: 5.753

8.  Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population.

Authors:  Margarita Takou; Tuomas Hämälä; Evan M Koch; Kim A Steige; Hannes Dittberner; Levi Yant; Mathieu Genete; Shamil Sunyaev; Vincent Castric; Xavier Vekemans; Outi Savolainen; Juliette de Meaux
Journal:  Mol Biol Evol       Date:  2021-05-04       Impact factor: 16.240

9.  Inferring Parameters of the Distribution of Fitness Effects of New Mutations When Beneficial Mutations Are Strongly Advantageous and Rare.

Authors:  Tom R Booker
Journal:  G3 (Bethesda)       Date:  2020-07-07       Impact factor: 3.154

10.  Purging of highly deleterious mutations through severe bottlenecks in Alpine ibex.

Authors:  Christine Grossen; Frédéric Guillaume; Lukas F Keller; Daniel Croll
Journal:  Nat Commun       Date:  2020-02-21       Impact factor: 14.919

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