| Literature DB >> 29299035 |
Mohammad Hossein Izadpanah1, Mohammad Reza Abbaszadegan1, Yasaman Fahim1, Mohammad Mahdi Forghanifard2.
Abstract
BACKGROUND: The transcription factor TWIST1 plays an important role in the epithelial-mesenchymal transition (EMT) process and in the migration, invasion and metastasis of cancer cells. OCT4, which is a homeobox transcription factor, has an important role in the self-renewal potential of cancer cells. Our aim here is to elucidate impact of ectopic expression of TWIST1 on OCT4 gene expression in esophageal squamous cell carcinoma (ESCC).Entities:
Keywords: Cancer stem cells (CSCs); Esophageal squamous cell carcinoma (ESCC); OCT4; TWIST1
Mesh:
Substances:
Year: 2017 PMID: 29299035 PMCID: PMC5747156 DOI: 10.1186/s11658-017-0065-x
Source DB: PubMed Journal: Cell Mol Biol Lett ISSN: 1425-8153 Impact factor: 5.787
Primer sequences used in real-time PCR
| Forward primer | Reverse primer | |
|---|---|---|
|
| GGAGTCCGCAGTCTTACGAG | TCTGGAGGACCTGGTAGAGG |
|
| CCTGAAGCAGAAGACGATCA | CCGCAGCTTACACATGTTCT |
|
| GGAAGGTGAAGGTCGGAGTCA | GTCATTGATGGCAACAATATCCAC |
Fig. 1A schematic view of the positions and sequences of seven E-box hexanucleotide consensus sequence CANNTG within 2 Kb upstream of the OCT4 transcription start site
The number and positions of E-box hexanucleotide consensus sequence (CANNTG) in OCT4 transcription unit
| Sequence | Number | Positions |
|---|---|---|
| CACTTG | 8 | 506–511, 4882–4887, 5233–5238, 5573–5578, 8676–8681, 12,560–12,565, 13,578–13,583, 15,856–15,861 |
| CAGGTG | 13 | 1160–1165,1527–1532,2430–2435,2951–2956*,3435–3440,3773–3778,4067–4072,6173–6178,10,155–10,160*, 10,695–10,700,14,196–14,201*,14,380–14,385*,15,862–15,867* |
| CAAGTG | 8 | 1283–1288,1518–1523,10,518–10,523,11,353–11,358,13,240–13,245,13,593–13,598*,13,613–13,618*,14,154–14,159* |
| CATCTG | 2 | 2013–2018,15,053–15,058 |
| CAGCTG | 11 | 2180–2185,2951–2956*,4829–4834,5708–5713,6782–6787*,7763–7768,7939–7944,9308–9313,9488–9493,10,593–10,598,10,635–10,640 |
| CACCTG | 15 | 2239–2244,3538–3543,3926–3921,4010–4015,4998–5003,6898–6903*,6922–6927*,9443–9448,10,121–10,126*,10,587–10,529,12,259–12,264,12,518–12,523,13,823–13,828*,15,348–15,353,15,435–15,440 |
| CATTTG | 4 | 2306–2311,4433–4438,11,264–11,269,14,514–14,519* |
| CATATG | 3 | 2538–2543,6233–6238,11,855–11,860 |
| CAGATG | 5 | 2556–2561,5599–5604,5700–5705,9206–9211,11,951–11,956 |
| CAGTTG | 4 | 4390–4395,5737–5742,9884–9889,12,014–12,019 |
| CAAATG | 1 | 4397–4402 |
| CACATG | 2 | 4569–4574,5850–5855 |
| CAACTG | 6 | 4850–4855,6768–6773*,10,665–10,670,10,728–10,733,15,680–15,685,16,283–16,288* |
| CATGTG | 2 | 5057–5062,15,092–15,097 |
| CAATTG | 1 | 11,487–11,492* |
The asterisks indicate exonic E-boxes
Fig. 2Enforced expression of TWIST1 upregulates OCT4 mRNA expression in KYSE30 cells. a – TWIST1 is overexpressed nine-fold in GFP-hTWIST1 compared to the control. This caused a statistically significant eight-fold increase in OCT4 mRNA expression. b – Phase contrast and fluorescent microscope images of GFP-hTWIST1 and control cells. The phase contrast images show the cells after 24 h and the fluorescent images are after 48 h
Fig. 3Computational relationship between genes based on the biograph database: http://www.biograph.be. a – Computational relationship between the TWIST1 and OCT4 genes. b – Computational relationship between the TWIST1 and ETS2 genes. c – Computational relationship between the OCT4 and ETS2 genes