Literature DB >> 29298290

motifStack for the analysis of transcription factor binding site evolution.

Jianhong Ou1, Scot A Wolfe1,2, Michael H Brodsky1,3, Lihua Julie Zhu1,3,4.   

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Year:  2018        PMID： 29298290     DOI： 10.1038/nmeth.4555

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

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2.  Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans.

Authors:  Guoyan Zhao; Nnamdi Ihuegbu; Mo Lee; Larry Schriefer; Ting Wang; Gary D Stormo
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3.  Quantifying similarity between motifs.

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4.  STAMP: a web tool for exploring DNA-binding motif similarities.

Authors:  Shaun Mahony; Panayiotis V Benos
Journal:  Nucleic Acids Res       Date:  2007-05-03       Impact factor: 16.971

Review 5.  A survey of DNA motif finding algorithms.

Authors:  Modan K Das; Ho-Kwok Dai
Journal:  BMC Bioinformatics       Date:  2007-11-01       Impact factor: 3.169

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Authors:  Martin Nettling; Hendrik Treutler; Jan Grau; Jens Keilwagen; Stefan Posch; Ivo Grosse
Journal:  BMC Bioinformatics       Date:  2015-11-17       Impact factor: 3.169
  6 in total
  23 in total

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2.  Expression of E93 provides an instructive cue to control dynamic enhancer activity and chromatin accessibility during development.

Authors:  Spencer L Nystrom; Matthew J Niederhuber; Daniel J McKay
Journal:  Development       Date:  2020-03-16       Impact factor: 6.868

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Journal:  Bioinformatics       Date:  2019-07-15       Impact factor: 6.937

4.  Generalizable strategy to analyze domains in the context of parent protein architecture: A CheW case study.

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Journal:  Proteins       Date:  2022-06-20

5.  Deficiency of ribosomal proteins reshapes the transcriptional and translational landscape in human cells.

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6.  A Single Mechanism of Biogenesis, Initiated and Directed by PIWI Proteins, Explains piRNA Production in Most Animals.

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7.  Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration.

Authors:  John D Thompson; Jianhong Ou; Nutishia Lee; Kwangdeok Shin; Valentina Cigliola; Lingyun Song; Gregory E Crawford; Junsu Kang; Kenneth D Poss
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8.  ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.

Authors:  Jianhong Ou; Haibo Liu; Jun Yu; Michelle A Kelliher; Lucio H Castilla; Nathan D Lawson; Lihua Julie Zhu
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9.  Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen.

Authors:  Fabian Sesterhenn; Marie Galloux; Sabrina S Vollers; Lucia Csepregi; Che Yang; Delphyne Descamps; Jaume Bonet; Simon Friedensohn; Pablo Gainza; Patricia Corthésy; Man Chen; Stéphane Rosset; Marie-Anne Rameix-Welti; Jean-François Éléouët; Sai T Reddy; Barney S Graham; Sabine Riffault; Bruno E Correia
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10.  The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family.

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