Literature DB >> 29298082

Quality Assurance After a Natural Disaster: Lessons from Hurricane Sandy.

Collin Dickerson1, Yanshen Hsu1, Sandra Mendoza1, Iman Osman2, Jennifer Ogilvie3, Kepal Patel3, Andre L Moreira4.   

Abstract

Biospecimen quality can vary depending on many pre- and post-collection variables. In this study, we consider a natural disaster as a post-collection variable that may have compromised the quality of frozen tissue specimens. To investigate this possible link, we compared the quality of nucleic acids, the level of antigenicity, and the preservation of histology from frozen specimens collected before and after the power outage caused by Hurricane Sandy. To analyze nucleic acid quality, we extracted both DNA and RNA and performed capillary electrophoresis to compare the quality and concentrations of the nucleic acids. To compare antigenicity, frozen sections were cut and immunostained for thyroid transcription factor 1 (TTF-1), a nuclear transcription protein commonly used as a diagnostic biomarker for multiple cancer types, including thyroid and lung cancers. Positive expression of TTF-1, as noted by homogenous nuclear staining, would demonstrate that the TTF-1 proteins could still bind antibodies and, therefore, that these proteins were not significantly degraded. Furthermore, representative frozen sections stained with hematoxylin and eosin were also assessed qualitatively by a trained pathologist to examine any possible histologic aberrations. Due to the similar quality of the tissue samples collected before and after the storm, Hurricane Sandy had no discernable effect on the quality of frozen specimens, and these specimens exposed to the natural disaster are still valuable research tools.

Entities:  

Keywords:  DNA extraction; RNA extraction; quality assurance; tissue banking

Mesh:

Year:  2018        PMID: 29298082      PMCID: PMC5906721          DOI: 10.1089/bio.2017.0104

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN: 1947-5543            Impact factor:   2.300


  16 in total

1.  Poor storage and handling of tissue mimics mitochondrial DNA depletion.

Authors:  A Berger; M Bruschek; C Grethen; W Sperl; B Kofler
Journal:  Diagn Mol Pathol       Date:  2001-03

Review 2.  Impact of warm ischemia on gene expression analysis in surgically removed biosamples.

Authors:  Yi Ma; HuiLi Dai; XianMing Kong
Journal:  Anal Biochem       Date:  2012-02-13       Impact factor: 3.365

Review 3.  Prognostic value of TTF-1 expression in patients with non-small cell lung cancer: A meta-analysis.

Authors:  Hai-hua Qian; Tian-shu Xu; Xiao-qin Cai; Tian-li Ji; Hai-xia Guo
Journal:  Clin Chim Acta       Date:  2015-02-04       Impact factor: 3.786

Review 4.  RNA integrity and the effect on the real-time qRT-PCR performance.

Authors:  Simone Fleige; Michael W Pfaffl
Journal:  Mol Aspects Med       Date:  2006-02-15

5.  Biobanks and Their Clinical Application and Informatics Challenges.

Authors:  Lan Yang; Yalan Chen; Chunjiang Yu; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

6.  Effect of storage time on gene expression data acquired from unfrozen archived newborn blood spots.

Authors:  Nhan T Ho; Julia V Busik; James H Resau; Nigel Paneth; Sok Kean Khoo
Journal:  Mol Genet Metab       Date:  2016-08-18       Impact factor: 4.797

7.  Influence of Freeze-Thaw Cycles on RNA Integrity of Gastrointestinal Cancer and Matched Adjacent Tissues.

Authors:  Ying Hu; Haibo Han; Yixue Wang; Lijie Song; Xiaojing Cheng; Xiaofang Xing; Bin Dong; Xiaohong Wang; Meng Chen; Lianhai Zhang; Jiafu Ji
Journal:  Biopreserv Biobank       Date:  2017-02-07       Impact factor: 2.300

8.  Impact of RNA degradation on gene expression profiling.

Authors:  Lennart Opitz; Gabriela Salinas-Riester; Marian Grade; Klaus Jung; Peter Jo; Georg Emons; B Michael Ghadimi; Tim Beissbarth; Jochen Gaedcke
Journal:  BMC Med Genomics       Date:  2010-08-09       Impact factor: 3.063

9.  Improving Ribosomal RNA Integrity in Surgically Resected Human Brain Tumor Biopsies.

Authors:  Xavier Castells Domingo; Laura Ferrer-Font; Myriam Davila; Ana Paula Candiota; Rui V Simões; Alejandro Fernández-Coello; Andreu Gabarrós; Susana Boluda; Anna Barceló; Joaquín Ariño; Carles Arús
Journal:  Biopreserv Biobank       Date:  2016-02-17       Impact factor: 2.300

10.  Effect of multiple cycles of freeze-thawing on the RNA quality of lung cancer tissues.

Authors:  Keke Yu; Jie Xing; Jie Zhang; Ruiying Zhao; Ye Zhang; Lanxiang Zhao
Journal:  Cell Tissue Bank       Date:  2017-06-01       Impact factor: 1.522

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