Literature DB >> 29297979

Development of predictive signatures for treatment selection in precision medicine with survival outcomes.

Yu-Chuan Chen1, Un Jung Lee1, Chen-An Tsai2, James J Chen1,3.   

Abstract

For survival endpoints in subgroup selection, a score conversion model is often used to convert the set of biomarkers for each patient into a univariate score and using the median of the univariate scores to divide the patients into biomarker-positive and biomarker-negative subgroups. However, this may lead to bias in patient subgroup identification regarding the 2 issues: (1) treatment is equally effective for all patients and/or there is no subgroup difference; (2) the median value of the univariate scores as a cutoff may be inappropriate if the sizes of the 2 subgroups are differ substantially. We utilize a univariate composite score method to convert the set of patient's candidate biomarkers to a univariate response score. We propose applying the likelihood ratio test (LRT) to assess homogeneity of the sampled patients to address the first issue. In the context of identification of the subgroup of responders in adaptive design to demonstrate improvement of treatment efficacy (adaptive power), we suggest that subgroup selection is carried out if the LRT is significant. For the second issue, we utilize a likelihood-based change-point algorithm to find an optimal cutoff. Our simulation study shows that type I error generally is controlled, while the overall adaptive power to detect treatment effects sacrifices approximately 4.5% for the simulation designs considered by performing the LRT; furthermore, the change-point algorithm outperforms the median cutoff considerably when the subgroup sizes differ substantially.
Copyright © 2018 John Wiley & Sons, Ltd.

Entities:  

Keywords:  Cox proportional hazards model; adaptive power; composite model; likelihood ratio test; precision medicine; subgroup selection

Mesh:

Year:  2018        PMID: 29297979     DOI: 10.1002/pst.1842

Source DB:  PubMed          Journal:  Pharm Stat        ISSN: 1539-1604            Impact factor:   1.894


  3 in total

1.  [Subgroup identification based on an accelerated failure time model combined with adaptive elastic net].

Authors:  Pei Kang; Jun Xu; Fuqiang Huang; Yingxin Liu; Shengli An
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2019-10-30

2.  [Subgroup identification based on accelerated failure time model combined with adaptive elastic net].

Authors:  H Wei; P Kang; Y Liu; F Huang; Z Chen; S An
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2021-03-25

3.  BioPETsurv: Methodology and open source software to evaluate biomarkers for prognostic enrichment of time-to-event clinical trials.

Authors:  Si Cheng; Kathleen F Kerr; Heather Thiessen-Philbrook; Steven G Coca; Chirag R Parikh
Journal:  PLoS One       Date:  2020-09-18       Impact factor: 3.240

  3 in total

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