Literature DB >> 29296732

Chromatin dynamics during the differentiation of long-term hematopoietic stem cells to multipotent progenitors.

Xiang Yu1, Chao Wu2, Dheeraj Bhavanasi3, Hong Wang4, Brian D Gregory1, Jian Huang2.   

Abstract

ATAC-seq provides genome-wide chromatin state in 3 cell types of hematopoietic stem/progenitor cells.Transcription factor cohorts are associated with dynamic changes of open chromatin during the differentiation of LT/ST-HSCs to MPPs.

Year:  2017        PMID： 29296732      PMCID： PMC5737588          DOI： 10.1182/bloodadvances.2016003384

Source DB:  PubMed          Journal:  Blood Adv        ISSN： 2473-9529


  46 in total

1.  MicroRNAs enriched in hematopoietic stem cells differentially regulate long-term hematopoietic output.

Authors:  Ryan M O'Connell; Aadel A Chaudhuri; Dinesh S Rao; William S J Gibson; Alejandro B Balazs; David Baltimore
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

Review 2.  Hematopoietic stem cell: self-renewal versus differentiation.

Authors:  Jun Seita; Irving L Weissman
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

3.  Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis.

Authors:  Joanne L Attema; Peter Papathanasiou; E Camilla Forsberg; Jian Xu; Stephen T Smale; Irving L Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-18       Impact factor: 11.205

4.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

Review 5.  Hematopoietic stem cell development: an epigenetic journey.

Authors:  Sean M Cullen; Allison Mayle; Lara Rossi; Margaret A Goodell
Journal:  Curr Top Dev Biol       Date:  2014       Impact factor: 4.897

6.  The long-term repopulating subset of hematopoietic stem cells is deterministic and isolatable by phenotype.

Authors:  S J Morrison; I L Weissman
Journal:  Immunity       Date:  1994-11       Impact factor: 31.745

7.  Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation.

Authors:  Kairong Cui; Chongzhi Zang; Tae-Young Roh; Dustin E Schones; Richard W Childs; Weiqun Peng; Keji Zhao
Journal:  Cell Stem Cell       Date:  2009-01-09       Impact factor: 24.633

8.  Hoxb5 marks long-term haematopoietic stem cells and reveals a homogenous perivascular niche.

Authors:  James Y Chen; Masanori Miyanishi; Sean K Wang; Satoshi Yamazaki; Rahul Sinha; Kevin S Kao; Jun Seita; Debashis Sahoo; Hiromitsu Nakauchi; Irving L Weissman
Journal:  Nature       Date:  2016-02-11       Impact factor: 49.962

9.  Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions.

Authors:  Elena M Pugacheva; Samuel Rivero-Hinojosa; Celso A Espinoza; Claudia Fabiola Méndez-Catalá; Sungyun Kang; Teruhiko Suzuki; Natsuki Kosaka-Suzuki; Susan Robinson; Vijayaraj Nagarajan; Zhen Ye; Abdelhalim Boukaba; John E J Rasko; Alexander V Strunnikov; Dmitri Loukinov; Bing Ren; Victor V Lobanenkov
Journal:  Genome Biol       Date:  2015-08-14       Impact factor: 13.583

10.  Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution.

Authors:  M Ryan Corces; Jason D Buenrostro; Beijing Wu; Peyton G Greenside; Steven M Chan; Julie L Koenig; Michael P Snyder; Jonathan K Pritchard; Anshul Kundaje; William J Greenleaf; Ravindra Majeti; Howard Y Chang
Journal:  Nat Genet       Date:  2016-08-15       Impact factor: 38.330
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  6 in total

1.  External signals regulate continuous transcriptional states in hematopoietic stem cells.

Authors:  Eva M Fast; Audrey Sporrij; Margot Manning; Edroaldo Lummertz Rocha; Song Yang; Yi Zhou; Jimin Guo; Ninib Baryawno; Nikolaos Barkas; David Scadden; Fernando Camargo; Leonard I Zon
Journal:  Elife       Date:  2021-12-23       Impact factor: 8.140

2.  Histone variant H3.3 maintains adult haematopoietic stem cell homeostasis by enforcing chromatin adaptability.

Authors:  Peipei Guo; Ying Liu; Fuqiang Geng; Andrew W Daman; Xiaoyu Liu; Liangwen Zhong; Arjun Ravishankar; Raphael Lis; José Gabriel Barcia Durán; Tomer Itkin; Fanying Tang; Tuo Zhang; Jenny Xiang; Koji Shido; Bi-Sen Ding; Duancheng Wen; Steven Z Josefowicz; Shahin Rafii
Journal:  Nat Cell Biol       Date:  2021-12-27       Impact factor: 28.213

3.  CD49b identifies functionally and epigenetically distinct subsets of lineage-biased hematopoietic stem cells.

Authors:  Ece Somuncular; Julia Hauenstein; Prajakta Khalkar; Anne-Sofie Johansson; Özge Dumral; Nicolai S Frengen; Charlotte Gustafsson; Giuseppe Mocci; Tsu-Yi Su; Hugo Brouwer; Christine L Trautmann; Michael Vanlandewijck; Stuart H Orkin; Robert Månsson; Sidinh Luc
Journal:  Stem Cell Reports       Date:  2022-06-16       Impact factor: 7.294

4.  Monocytic differentiation and AHR signaling as Primary Nodes of BET Inhibitor Response in Acute Myeloid Leukemia.

Authors:  Kyle A Romine; Tamilla Nechiporuk; Daniel Bottomly; Sophia Jeng; Shannon K McWeeney; Andy Kaempf; M Ryan Corces; Ravindra Majeti; Jeffrey W Tyner
Journal:  Blood Cancer Discov       Date:  2021-07-01

5.  Combined analysis of dissimilar promoter accessibility and gene expression profiles identifies tissue-specific genes and actively repressed networks.

Authors:  Rebekah R Starks; Anilisa Biswas; Ashish Jain; Geetu Tuteja
Journal:  Epigenetics Chromatin       Date:  2019-02-22       Impact factor: 4.954

6.  Temporal expression of MOF acetyltransferase primes transcription factor networks for erythroid fate.

Authors:  Cecilia Pessoa Rodrigues; Josip Stefan Herman; Benjamin Herquel; Claudia Isabelle Keller Valsecchi; Thomas Stehle; Dominic Grün; Asifa Akhtar
Journal:  Sci Adv       Date:  2020-05-20       Impact factor: 14.136
  6 in total

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