Literature DB >> 29295111

The Pluripotent Rendering of Clinical Data for Precision Medicine.

Christopher G Chute1, Stanley M Huff2.   

Abstract

Health care and biomedical research are awash in data. Traditional data warehouse methodologies do not scale to this challenge; nor do their schema match the variety of analytic use cases. An alternative model, which shreds data into well-formed constituent data elements, conformant with the emerging CIMI-FHIR standards and stored together with the complete, raw, source data using modern and scalable data utilities such as Hadoop and its derivatives, affords the creation of pluripotent data repositories. Such repositories can be leveraged to generate any number of data marts, registries, and analytic data sets, each of which "just in time" binds an appropriate use-case specific data model. We call this notion PiCaRD: Pluripotent Clinical Repository of Data. We believe such nimble biomedical data management strategies are crucial for Precision Medicine discovery and application.

Keywords:  Archiving; Common Data Elements; Reference Standards

Mesh:

Year:  2017        PMID: 29295111

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  3 in total

Review 1.  HL7 FHIR-based tools and initiatives to support clinical research: a scoping review.

Authors:  Stephany N Duda; Nan Kennedy; Douglas Conway; Alex C Cheng; Viet Nguyen; Teresa Zayas-Cabán; Paul A Harris
Journal:  J Am Med Inform Assoc       Date:  2022-08-16       Impact factor: 7.942

2.  Fast Healthcare Interoperability Resources (FHIR) as a Meta Model to Integrate Common Data Models: Development of a Tool and Quantitative Validation Study.

Authors:  Emily Rose Pfaff; James Champion; Robert Louis Bradford; Marshall Clark; Hao Xu; Karamarie Fecho; Ashok Krishnamurthy; Steven Cox; Christopher G Chute; Casey Overby Taylor; Stan Ahalt
Journal:  JMIR Med Inform       Date:  2019-10-16

3.  The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.

Authors:  Melissa A Haendel; Christopher G Chute; Tellen D Bennett; David A Eichmann; Justin Guinney; Warren A Kibbe; Philip R O Payne; Emily R Pfaff; Peter N Robinson; Joel H Saltz; Heidi Spratt; Christine Suver; John Wilbanks; Adam B Wilcox; Andrew E Williams; Chunlei Wu; Clair Blacketer; Robert L Bradford; James J Cimino; Marshall Clark; Evan W Colmenares; Patricia A Francis; Davera Gabriel; Alexis Graves; Raju Hemadri; Stephanie S Hong; George Hripscak; Dazhi Jiao; Jeffrey G Klann; Kristin Kostka; Adam M Lee; Harold P Lehmann; Lora Lingrey; Robert T Miller; Michele Morris; Shawn N Murphy; Karthik Natarajan; Matvey B Palchuk; Usman Sheikh; Harold Solbrig; Shyam Visweswaran; Anita Walden; Kellie M Walters; Griffin M Weber; Xiaohan Tanner Zhang; Richard L Zhu; Benjamin Amor; Andrew T Girvin; Amin Manna; Nabeel Qureshi; Michael G Kurilla; Sam G Michael; Lili M Portilla; Joni L Rutter; Christopher P Austin; Ken R Gersing
Journal:  J Am Med Inform Assoc       Date:  2021-03-01       Impact factor: 7.942

  3 in total

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