Literature DB >> 29289740

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka.

Alba Grifoni1, Daniela Weiskopf1, Cecilia S Lindestam Arlehamn1, Michael Angelo1, Shay Leary2, John Sidney1, April Frazier1, Elizabeth Phillips3, Simon Mallal3, Steven J Mack4, Rashmi Tippalagama5, Suraj Goonewardana5, Sunil Premawansa6, Gayani Premawansa7, Ananda Wijewickrama8, Aruna D De Silva9, Alessandro Sette10.   

Abstract

DNA sequence-based typing at the HLA-A, -B, -C, -DPB1, -DQA1, -DQB1, and -DRB1 loci was performed on 714 healthy adult blood bank donors from Colombo, Sri Lanka, to characterize allele frequencies in support of studies on T cell immunity against pathogens, including Dengue virus. Deviations from Hardy Weinberg proportions were not detected at any locus. Several alleles were found in >30% of individuals, including the class II alleles DPB1 * 04:01, DPB1 * 02:01, DQB1 * 06:01 and DRB1 * 07:01, and the class I alleles A * 33:03 and A * 24:02. Genotype data will be available in the Allele Frequencies Net Database.
Copyright © 2018 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Colombo, Sri Lanka; HLA alleles; HLA typing; Moors; Sinhalese; Tamil

Mesh:

Substances:

Year:  2017        PMID: 29289740      PMCID: PMC6378951          DOI: 10.1016/j.humimm.2017.12.007

Source DB:  PubMed          Journal:  Hum Immunol        ISSN: 0198-8859            Impact factor:   2.850


  3 in total

1.  Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses.

Authors:  Alba Grifoni; Eugene Moore; Hannah Voic; John Sidney; Elizabeth Phillips; Ramesh Jadi; Simon Mallal; Aruna D De Silva; Aravinda M De Silva; Bjoern Peters; Daniela Weiskopf; Alessandro Sette
Journal:  Front Immunol       Date:  2019-07-05       Impact factor: 7.561

2.  Identification of Novel Candidate CD8+ T Cell Epitopes of the SARS-CoV2 with Homology to Other Seasonal Coronaviruses.

Authors:  Pradeep Darshana Pushpakumara; Deshan Madhusanka; Saubhagya Dhanasekara; Chandima Jeewandara; Graham S Ogg; Gathsaurie Neelika Malavige
Journal:  Viruses       Date:  2021-05-24       Impact factor: 5.048

3.  Identification of Novel Yellow Fever Class II Epitopes in YF-17D Vaccinees.

Authors:  Jose Mateus; Alba Grifoni; Hannah Voic; Michael A Angelo; Elizabeth Phillips; Simon Mallal; John Sidney; Alessandro Sette; Daniela Weiskopf
Journal:  Viruses       Date:  2020-11-12       Impact factor: 5.048

  3 in total

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