Literature DB >> 29288711

Whole genome sequence of Auricularia heimuer (Basidiomycota, Fungi), the third most important cultivated mushroom worldwide.

Yuan Yuan1, Fang Wu2, Jing Si2, Yi-Fan Zhao3, Yu-Cheng Dai4.   

Abstract

Heimuer, Auricularia heimuer, is one of the most famous traditional Chinese foods and medicines, and it is the third most important cultivated mushroom worldwide. The aim of this study is to develop genomic resources for A. heimuer to furnish tools that can be used to study its secondary metabolite production capability, wood degradation ability and biosynthesis of polysaccharides. The genome was obtained from single spore mycelia of the strain Dai 13782 by using combined high-throughput Illumina HiSeq 4000 system with the PacBio RSII long-read sequencing platform. Functional annotation was accomplished by blasting protein sequences with different public available databases to obtain their corresponding annotations. It is 49.76Mb in size with a N50 scaffold size of 1,350,668bp and encodes 16,244 putative predicted genes. This is the first genome-scale assembly and annotation for A. heimuer, which is the third sequenced species in Auricularia.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Auricularia heimuer; Edible-medicinal fungus; Secondary metabolism; Whole genome sequencing

Mesh:

Substances:

Year:  2017        PMID: 29288711     DOI: 10.1016/j.ygeno.2017.12.013

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  21 in total

1.  A novel fungal negative-stranded RNA virus related to mymonaviruses in Auricularia heimuer.

Authors:  Xuefei Li; Qingcheng Liu; Shiyu Li; Frederick Leo Sossah; Xuerong Han; Guosheng Zhu; Yu Li; Changtian Li; Yongping Fu
Journal:  Arch Virol       Date:  2022-08-13       Impact factor: 2.685

2.  Pan-Genomes Provide Insights into the Genetic Basis of Auricularia heimuer Domestication.

Authors:  Yuxiu Guo; Zhenhua Liu; Yongping Fu; Yu Li; Yueting Dai; Shijun Xiao
Journal:  J Fungi (Basel)       Date:  2022-05-29

3.  Genomic and transcriptomic survey of an endophytic fungus Calcarisporium arbuscula NRRL 3705 and potential overview of its secondary metabolites.

Authors:  Jin-Tao Cheng; Fei Cao; Xin-Ai Chen; Yong-Quan Li; Xu-Ming Mao
Journal:  BMC Genomics       Date:  2020-06-24       Impact factor: 3.969

4.  Increasing Coverage of Proteome Identification of the Fruiting Body of Agaricus bisporus by Shotgun Proteomics.

Authors:  Tae-Ho Ham; Yoonjung Lee; Soon-Wook Kwon; Myoung-Jun Jang; Youn-Jin Park; Joohyun Lee
Journal:  Foods       Date:  2020-05-14

5.  Comparative transcriptome analysis reveals relationship of three major domesticated varieties of Auricularia auricula-judae.

Authors:  Yuhui Zhao; Liang Wang; Dongshan Zhang; Rong Li; Tianyou Cheng; Yibi Zhang; Xueju Liu; Gary Wong; Yuguo Tang; Hui Wang; Shan Gao
Journal:  Sci Rep       Date:  2019-01-11       Impact factor: 4.379

6.  Genomic Analyses Provide Insights Into the Evolutionary History and Genetic Diversity of Auricularia Species.

Authors:  Yueting Dai; Xiao Li; Bing Song; Lei Sun; Chentao Yang; Xin Zhang; Yanfeng Wang; Zhiwu Zhang; Yongping Fu; Yu Li
Journal:  Front Microbiol       Date:  2019-10-01       Impact factor: 5.640

7.  Genomic Analysis of Sarcomyxa edulis Reveals the Basis of Its Medicinal Properties and Evolutionary Relationships.

Authors:  Fenghua Tian; Changtian Li; Yu Li
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

8.  Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus.

Authors:  Byoungnam Min; Seunghwan Kim; Youn-Lee Oh; Won-Sik Kong; Hongjae Park; Heejung Cho; Kab-Yeul Jang; Jeong-Gu Kim; In-Geol Choi
Journal:  BMC Genomics       Date:  2018-11-01       Impact factor: 3.969

9.  Genome Sequencing Illustrates the Genetic Basis of the Pharmacological Properties of Gloeostereum incarnatum.

Authors:  Xinxin Wang; Jingyu Peng; Lei Sun; Gregory Bonito; Jie Wang; Weijie Cui; Yongping Fu; Yu Li
Journal:  Genes (Basel)       Date:  2019-03-01       Impact factor: 4.096

10.  Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map.

Authors:  Ming Fang; Xiaoe Wang; Ying Chen; Peng Wang; Lixin Lu; Jia Lu; Fangjie Yao; Youmin Zhang
Journal:  J Fungi (Basel)       Date:  2020-03-16
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.