| Literature DB >> 29288711 |
Yuan Yuan1, Fang Wu2, Jing Si2, Yi-Fan Zhao3, Yu-Cheng Dai4.
Abstract
Heimuer, Auricularia heimuer, is one of the most famous traditional Chinese foods and medicines, and it is the third most important cultivated mushroom worldwide. The aim of this study is to develop genomic resources for A. heimuer to furnish tools that can be used to study its secondary metabolite production capability, wood degradation ability and biosynthesis of polysaccharides. The genome was obtained from single spore mycelia of the strain Dai 13782 by using combined high-throughput Illumina HiSeq 4000 system with the PacBio RSII long-read sequencing platform. Functional annotation was accomplished by blasting protein sequences with different public available databases to obtain their corresponding annotations. It is 49.76Mb in size with a N50 scaffold size of 1,350,668bp and encodes 16,244 putative predicted genes. This is the first genome-scale assembly and annotation for A. heimuer, which is the third sequenced species in Auricularia.Entities:
Keywords: Auricularia heimuer; Edible-medicinal fungus; Secondary metabolism; Whole genome sequencing
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Year: 2017 PMID: 29288711 DOI: 10.1016/j.ygeno.2017.12.013
Source DB: PubMed Journal: Genomics ISSN: 0888-7543 Impact factor: 5.736