Literature DB >> 29288348

Whole sequence analysis indicates a recent southern origin of Mongolian Y-chromosome C2c1a1a1-M407.

Yun-Zhi Huang1, Lan-Hai Wei1,2, Shi Yan1, Shao-Qing Wen1, Chuan-Chao Wang3, Ya-Jun Yang1, Ling-Xiang Wang1, Yan Lu4, Chao Zhang4,5, Shu-Hua Xu1,4,5,6, Da-Li Yao7, Li Jin1, Hui Li8.   

Abstract

The Y-chromosome haplogroup C2c1a1a1-M407 is a predominant paternal lineage in Mongolic-speaking populations, especially in Buryats and Kalmyks. However, the origin and internal phylogeny of C2c1a1a1-M407 have not been investigated in detail. In this study, we analyzed twenty-three Y-chromosome sequences of haplogroup C2c1a1a1-M407 and its most closely related clades. We generated a high-resolution phylogenetic tree of haplogroup C2c1a1a1-M407 and its upstream clade C2c1a1-CTS2657, including 32 subclades and 144 non-private Y-chromosome polymorphisms. We discover that all available C2c1a1a1-M407 samples from Mongolic-speaking populations belong to its newly defined downstream clade C2c1a1a1b-F8465, whereas all samples of C2c1a1-CTS2657(xF8465) come from northern Han Chinese, Korean, and Japanese. Furthermore, we observe that C2c1a1a1b-F8465 and its subclade C2c1a1a1b1-F8536 expanded at approximately 0.86 and 0.44 thousand years ago, respectively. Therefore, we conclude that C2c1a1a1-M407 in Mongolic-speaking populations has originated from northeastern Asia. C2c1a1a1b1-F8536, the newly defined subclade of C2c1a1a1-M407, probably represents the genetic relationships between ancient Oyrats, modern Kalmyks, Mongolians, and Buryats.

Keywords:  C2c1a1a1-M407; Han Chinese; Mongolic-speaking; Y-chromosome sequence

Mesh:

Year:  2017        PMID: 29288348     DOI: 10.1007/s00438-017-1403-4

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  26 in total

1.  Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow.

Authors:  L A Zhivotovsky
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

2.  A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia.

Authors:  Tatiana Zerjal; R Spencer Wells; Nadira Yuldasheva; Ruslan Ruzibakiev; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2002-07-17       Impact factor: 11.025

3.  Phylogeography of the Y-chromosome haplogroup C in northern Eurasia.

Authors:  Boris Malyarchuk; Miroslava Derenko; Galina Denisova; Marcin Wozniak; Tomasz Grzybowski; Irina Dambueva; Ilia Zakharov
Journal:  Ann Hum Genet       Date:  2010-08-20       Impact factor: 1.670

4.  Genetic evidence for the Mongolian ancestry of Kalmyks.

Authors:  Ivan Nasidze; Dominique Quinque; Isabelle Dupanloup; Richard Cordaux; Lyudmila Kokshunova; Mark Stoneking
Journal:  Am J Phys Anthropol       Date:  2005-12       Impact factor: 2.868

5.  [Distribution of the male lineages of Genghis Khan's descendants in northern Eurasian populations].

Authors:  M V Derenko; B A Maliarchuk; M Wozniak; G A Denisova; I K Dambueva; C M Dorzhu; T Grzybowski; I A Zakharov
Journal:  Genetika       Date:  2007-03

Review 6.  Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.

Authors:  G David Poznik; Yali Xue; Fernando L Mendez; Thomas F Willems; Andrea Massaia; Melissa A Wilson Sayres; Qasim Ayub; Shane A McCarthy; Apurva Narechania; Seva Kashin; Yuan Chen; Ruby Banerjee; Juan L Rodriguez-Flores; Maria Cerezo; Haojing Shao; Melissa Gymrek; Ankit Malhotra; Sandra Louzada; Rob Desalle; Graham R S Ritchie; Eliza Cerveira; Tomas W Fitzgerald; Erik Garrison; Anthony Marcketta; David Mittelman; Mallory Romanovitch; Chengsheng Zhang; Xiangqun Zheng-Bradley; Gonçalo R Abecasis; Steven A McCarroll; Paul Flicek; Peter A Underhill; Lachlan Coin; Daniel R Zerbino; Fengtang Yang; Charles Lee; Laura Clarke; Adam Auton; Yaniv Erlich; Robert E Handsaker; Carlos D Bustamante; Chris Tyler-Smith
Journal:  Nat Genet       Date:  2016-04-25       Impact factor: 38.330

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Authors:  Qiaomei Fu; Heng Li; Priya Moorjani; Flora Jay; Sergey M Slepchenko; Aleksei A Bondarev; Philip L F Johnson; Ayinuer Aximu-Petri; Kay Prüfer; Cesare de Filippo; Matthias Meyer; Nicolas Zwyns; Domingo C Salazar-García; Yaroslav V Kuzmin; Susan G Keates; Pavel A Kosintsev; Dmitry I Razhev; Michael P Richards; Nikolai V Peristov; Michael Lachmann; Katerina Douka; Thomas F G Higham; Montgomery Slatkin; Jean-Jacques Hublin; David Reich; Janet Kelso; T Bence Viola; Svante Pääbo
Journal:  Nature       Date:  2014-10-23       Impact factor: 49.962

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Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

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Authors:  Sebastian Lippold; Hongyang Xu; Albert Ko; Mingkun Li; Gabriel Renaud; Anne Butthof; Roland Schröder; Mark Stoneking
Journal:  Investig Genet       Date:  2014-09-24

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Authors:  Monika Karmin; Lauri Saag; Mário Vicente; Melissa A Wilson Sayres; Mari Järve; Ulvi Gerst Talas; Siiri Rootsi; Anne-Mai Ilumäe; Reedik Mägi; Mario Mitt; Luca Pagani; Tarmo Puurand; Zuzana Faltyskova; Florian Clemente; Alexia Cardona; Ene Metspalu; Hovhannes Sahakyan; Bayazit Yunusbayev; Georgi Hudjashov; Michael DeGiorgio; Eva-Liis Loogväli; Christina Eichstaedt; Mikk Eelmets; Gyaneshwer Chaubey; Kristiina Tambets; Sergei Litvinov; Maru Mormina; Yali Xue; Qasim Ayub; Grigor Zoraqi; Thorfinn Sand Korneliussen; Farida Akhatova; Joseph Lachance; Sarah Tishkoff; Kuvat Momynaliev; François-Xavier Ricaut; Pradiptajati Kusuma; Harilanto Razafindrazaka; Denis Pierron; Murray P Cox; Gazi Nurun Nahar Sultana; Rane Willerslev; Craig Muller; Michael Westaway; David Lambert; Vedrana Skaro; Lejla Kovačevic; Shahlo Turdikulova; Dilbar Dalimova; Rita Khusainova; Natalya Trofimova; Vita Akhmetova; Irina Khidiyatova; Daria V Lichman; Jainagul Isakova; Elvira Pocheshkhova; Zhaxylyk Sabitov; Nikolay A Barashkov; Pagbajabyn Nymadawa; Evelin Mihailov; Joseph Wee Tien Seng; Irina Evseeva; Andrea Bamberg Migliano; Syafiq Abdullah; George Andriadze; Dragan Primorac; Lubov Atramentova; Olga Utevska; Levon Yepiskoposyan; Damir Marjanovic; Alena Kushniarevich; Doron M Behar; Christian Gilissen; Lisenka Vissers; Joris A Veltman; Elena Balanovska; Miroslava Derenko; Boris Malyarchuk; Andres Metspalu; Sardana Fedorova; Anders Eriksson; Andrea Manica; Fernando L Mendez; Tatiana M Karafet; Krishna R Veeramah; Neil Bradman; Michael F Hammer; Ludmila P Osipova; Oleg Balanovsky; Elza K Khusnutdinova; Knut Johnsen; Maido Remm; Mark G Thomas; Chris Tyler-Smith; Peter A Underhill; Eske Willerslev; Rasmus Nielsen; Mait Metspalu; Richard Villems; Toomas Kivisild
Journal:  Genome Res       Date:  2015-03-13       Impact factor: 9.043

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