| Literature DB >> 29280364 |
Gui-Chun Liu1,2, Zhi-Wei Dong1, Jin-Wu He1,3, Ruo-Ping Zhao1, Wen Wang1,2, Xue-Yan Li4.
Abstract
Eukaryotic genome size data are important both as the basis for comparative research into genome evolution and as estimators of the cost and difficulty of genome sequencing programs for non-model organisms. In this study, the genome size of 14 species of fireflies (Lampyridae) (two genera in Lampyrinae, three genera in Luciolinae, and one genus in subfamily incertae sedis) were estimated by propidium iodide (PI)-based flow cytometry. The haploid genome sizes of Lampyridae ranged from 0. 42 to 1. 31 pg, a 3. 1-fold span. Genome sizes of the fireflies varied within the tested subfamilies and genera. Lamprigera and Pyrocoelia species had large and small genome sizes, respectively. No correlation was found between genome size and morphological traits such as body length, body width, eye width, and antennal length. Our data provide additional information on genome size estimation of the firefly family Lampyridae. Furthermore, this study will help clarify the cost and difficulty of genome sequencing programs for non-model organisms and will help promote studies on firefly genome evolution.Entities:
Keywords: Evolution; Firefly; Flow cytometry; Haploid genome size
Mesh:
Year: 2017 PMID: 29280364 PMCID: PMC5767557 DOI: 10.24272/j.issn.2095-8137.2017.078
Source DB: PubMed Journal: Zool Res ISSN: 2095-8137
Sample information in this study
| Family/subfamily | Species | Locality/Collection information | |
| | |||
| Lampyridae/ | 20(8) | Kunming University of Science and Technology, Wuhua District, Kunming City, Yunnan, China, E102.694166°, N25.061163°, 7 September 2016, by Zhi-Wei Dong; Kunming Botanical Garden, Ciba Township, Wuhua District, Kunming City, Yunnan, China, E102.743100°, N25.138816°, 10 November 2007, Qing-Bai Hou et al, 21 September 2016, by Bao Wang et al; Jindian reservoir, Wuhua District, Kunming City, Yunnan, China, E102.776606°, N25.085929°, 21 September 2016, by Zhi-Wei Dong | |
| 25 | Xishuangbanna Tropical Botanical Garden, Mengla County, Xishuangbanna Prefecture, Yunnan, China, E101.269537°, N21.918722°, 8 November 2016, by Xue-Yan Li et al | ||
| 7 | Nankang, Lujiang Township, Longyang District, Baoshan City, Yunnan, China, E98.768806°, N24.823003°, 8 November 2016, by Zhi-Wei Dong et al | ||
| Lampyridae/Lampyrinae | 12 | Nankang, Lujiang Township, Longyang District, Baoshan City, Yunnan, China, E98.768806°, N24.823003°, 8 November 2016, by Zhi-Wei Dong et al; Dahaoping, Shangyun Township, Tengchong County, Baoshan City, Yunnan, China, E98.730027°, N24.976472°, 17 October 2003, by Xue-Yan Li et al | |
| 12 | Xishuangbanna Tropical Botanical Garden, Mengla County, Xishuangbanna Prefecture, Yunnan, China, E101.269537°, N21.918722°, 25 November 2016, by Zhi-Wei Dong et al | ||
| 12 | Nankang, Lujiang Township, Longyang District, Baoshan City, Yunnan, China, E98.768806°, N24.823003°, 8 November 2016, by Zhi-Wei Dong et al | ||
| 16+2# | Kunming Botanical Garden, Ciba Township, Wuhua District, Kunming City, Yunnan, China, E102.743100°, N25.138816°, 20 August 2016, by Zhi-Wei Dong; Yuanjiang County, Yuxi City, Yunnan, China, 1986, by local villagers | ||
| 11 | Datian, Dedang County, Lincang city, Yunnan, China, 8 October 2016, by Bo Ma | ||
| 15 | Zongluzui Township, Tuanfen County, Wuhan City, Hubei, China 8 October 2016, by local villagers | ||
| 13 | Baoshang, Miaoba village, Funing County, Wenshan Prefecture, Yunnan, China, 21 October 2006, by local villagers | ||
| Lampyridae/Luciolinae | 50(20) | Menglun Township, Mengla County, Xishuangbanna Prefecture, Yunnan, China, 14 August 2015, by local villagers | |
| 20(10) | Zhaotong City, Yunnan, China, 20 July 2003, by Hua-Li Chen | ||
| 11(15) | Menglun Township, Mengla County, Xishuangbanna Prefecture, Yunnan, China, 11 August 2016, by local villagers | ||
| 20 | Tunchang County, Hainan, China, 10 October 2016, by local villagers | ||
Summary of the genome size (GS, in pg and Mb) of males of 14 firefly species and body size information, including body length (BL), body width (BW), antennal length (AL), and eye width (EYW)
| Species | GS (pg) | GS (Mb) | BL (mm) | BW (mm) | AL (mm) | EYW (mm) | N1 | N2 | Accession No. |
| All values of genome size and body size are shown as mean± | |||||||||
| Subfamily | |||||||||
| 1.066±0.011 | 1 042.4±10.9 | 17.14±0.133 | 7.54±0.133 | 2.12±0.058 | 2.98±0.08 | 5 | 5 | MG200082 | |
| 1.133±0.004 | 1 107.7±4.1 | 17.75±0.25 | 7.625±0.11 | 2.45±0.029 | 3.225±0.111 | 3 | 4 | MF375916 | |
| 1.31±0.014 | 1 281.0±13.3 | 18.36±0.117 | 8.96±0.051 | 2.56±0.04 | 3.42±0.02 | 5 | 5 | MF375915 | |
| Subfamily Lampyrinae | |||||||||
| 0.525±0.018 | 513.0±17.2 | 12.6±0.187 | 4.5±0.158 | 3.38±0.49 | 1.96±0.024 | 5 | 5 | MG200080 | |
| 1.007±0.022 | 984.9±21.5 | 10.6±0.43 | 3.78±0.08 | 5.86±0.22 | 1.16±0.04 | 6 | 5 | MF375910 | |
| 1.201±0.04 | 1 174.8±39.3 | 16.1±0.66 | 7.36±0.15 | 5.32±0.177 | 2.78±0.073 | 6 | 5 | MF375911 | |
| 0.421±0.004 | 411.6±10.8 | 20.04±0.163 | 10.58±0.296 | 8.64±0.103 | 2.04±0.024 | 6 | 5 | MF375914 | |
| 0.513±0.003 | 501.9±3.4 | 16.9±0.43 | 6.76±0.103 | 6.48±0.27 | 2.1±0.063 | 6 | 5 | MF375913 | |
| 0.743±0.021 | 726.2±20.4 | 12.8±0.255 | 5.4±0.13 | 5.24±0.068 | 1.14±0.024 | 2 | 5 | MG200081 | |
| 0.754±0.021 | 737.2±20.9 | 22±0.707 | 8.54±0.37 | 8.17±0.068 | 2.08±0.037 | 5 | 5 | MF375912 | |
| Subfamily Luciolinae | |||||||||
| 0.503±0.01 | 491.5±8.9 | 10.84±0.144 | 4.2±0.138 | 4.46±0.051 | 2.26±0.024 | 5 | 5 | MG200084 | |
| 0.744±0.024 | 728.0±23.5 | 9.82±0.037 | 3.84±0.068 | 3.18±0.066 | 1.64±0.024 | 5 | 5 | MG200085 | |
| 1.121±0.114 | 1 096.1±111.2 | 14±0.161 | 4.76±0.025 | 4.38±0.058 | 1.24±0.025 | 5 | 5 | MG200086 | |
| 1.288±0.015 | 1 259.2±14.5 | 6.32±0.111 | 2.48±0.086 | 2.24±0.081 | 1.66±0.024 | 6 | 5 | MG200083 | |
Figure 1Habitus of 14 firefly species (All figures show dorsal view on the left and ventral on the right)
Figure 2Number of nuclei measured by propidium iodide fluorescence PI(PMT4)-stained flow cytometry
Comparison of genome size for fireflies (Lampyridae) and other beetle families with described genome size
| Family | Genera | Species | Genome size (pg) | Fold |
| NA: Not available because only one species was reported. | ||||
| Lampyridae (Asia) | 6 | 14 | 0.42-1.31 | 3.1 |
| (North America) | 7 | 23 | 0.44-2.63 | 5.9 |
| Carabidae | 1 | 1 | 0.23 | NA |
| Chrysomelidae | 27 | 65 | 0.17-3.69 | 21.7 |
| Coccinellidae | 27 | 39 | 0.19-5.02 | 26 |
| Dermestidae | 1 | 6 | 0.90-1.98 | 2.2 |
| Dytiscidae | 2 | 2 | 1.01-1.22 | 1.2 |
| Geotrupidae | 1 | 1 | 0.83 | NA |
| Scarabeidae | 2 | 3 | 0.8-2.71 | 3.39 |
| Silvanidae | 1 | 1 | 0.25 | NA |
| Tenebrionidae | 28 | 69 | 0.16-0.87 | 5 |
Summary of genome sizes (GS, in pg and Mb) of males and females from four firefly species
| Male | Female | N1 | N3 | |||
|
| GS (pg) | GS (Mb) | GS (pg) | GS (Mb) | ||
| All values of genome size are shown as mean± | ||||||
| Subfamily | ||||||
| 1.066±0.011 | 1 042.4±10.9 | 1.051±0.033 | 1 028.1±32.6 | 5 | 6 | |
| Subfamily Luciolinae | ||||||
| 0.503±0.01 | 491.5±8.9 | 0.509±0.023 | 498.2±22.7 | 5 | 4 | |
| 1.121±0.114 | 1 096.1±111.2 | 1.335±0.071 | 1 305.2±70.0 | 5 | 6 | |
| 0.744±0.024 | 728.0±23.5 | 0.758±0.03 | 741.5±29.2 | 5 | 6 | |
Figure 3Phylogenetic trees of fireflies included in this study
Figure 4Relationships between diploid genome size and body size (mm) in fireflies